1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAAGCCGTCTCGTATGTAAAGTTTGTATCGCCCAACGAGTTGGCCTCGGCTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAGgtatgcatatctctacagctctttagctcgaaggtttcctgatcgatcaaatcaaacaccgtgctttgtctatgcag
species | Selaginella moellendorffii |
transcript | EFJ20512 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAG ATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAEST: gi|169076926|gb|FE485306.1|FE485306
genomic: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAGgtatgcatat ... gtctatgcagATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACA
EST: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAG ATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAEST: gi|70669297|gb|DN837874.1|DN837874
genomic: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAGgtatgcatat ... gtctatgcagATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACA
EST: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAG ATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAEST: gi|169064441|gb|FE472108.1|FE472108
genomic: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAGgtatgcatat ... gtctatgcagATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACA
EST: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAG ATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACAEST: gi|169076925|gb|FE485305.1|FE485305
genomic: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAGgtatgcatat ... gtctatgcagATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACA
EST: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAG ATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACA
genomic: CTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAGgtatgcatat ... gtctatgcagATACGCAGCCTCACAGGCCATGCTAACGAGAAGAACTTTGTAGGCTTGACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAAGCCGTCTCGTATGTAAAGTTTGTATCGCCCAACGAGTTGGCCTCGGCTTCCACTGACAGTACACTGCGATTGTGGGACGTCCAGAAGAGCTCCCAGgtatgcatatctctacagctctttagctcgaaggtttcctgatcgatcaaatcaaacaccgtgctttgtctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT