Sequence
atgc intronic sequence ATGC exonic sequenceTGTTATCGACTGTGGGAAAGCTAAGGAAACTAGCTATGATGCTCTTAACAAGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAGgtctgaatttacgtccttggttcttagctgaaggatttctagcacattttcttgcttttatttgccag
Basic information
species | Selaginella moellendorffii |
transcript | EFJ10915 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ10915 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: GRMZM2G384369_T01 (Zea mays), 5'ss of exon 1
TGTTATCGACTGTGGGAAAGCTAAGGAAACTAGCTATGATGCTCTTAACAAGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAGgt---------ctgaatttacgtc-cttggttcttagc-----tgaaggattt-ctagcacat--------tttcttgcttttatttgccag
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TGTGATTGATTGTGGTAAGGCCAAGGAGACAAGCTATGATGCCTTGAATAAGCTCGCATGCCTTCTTCCATCATGGATATCAAAAGCTTCTGCTCATCAGgtatgttactgctgacaatatgtaactaggctctttgcagacatgaaaagtccattaacagatgcagttctctctttatttttattcacag-
upper sequence: EFJ10915 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: AT2G35920.1 (Arabidopsis thaliana), 5'ss of exon 11
TGTTATCGACTGTGGGAAAGCTAAGGAAACTAGCTATGATGCTCTTAACAAGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAGgtct--ga--atttacgtccttggttcttagctga-aggatttctagcac---attttcttgcttttatttgccag----------------------------------------------------------------
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TGTTGTGGATTGTGGTAAAGCAAAGGAAACTAGCTATGATGCTTTGAACAAGGTGGCATGTCTCTTGCCATCATGGATATCAAAGGCTTCAGCTCACCAGgtattcgactaaccataaaattgtctatcagtaatcaagatccctttcattcaatgatctaagtactgcgc-ccagatcatagatgtgcttgtaagacttaaaacccgtgcttttctctgtggctttggtacaaatgcag
upper sequence: EFJ10915 (Selaginella moellendorffii), 5'ss of exon 11
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 5'ss of exon 11
TGTTATCGACTGTGGGAAAGCTAAGGAAACTAGCTATGATGCTCTTAACAAGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAGgtctgaatttacgtccttggttcttagctgaaggatttctagcacattttcttgcttttatttgccag-------------------------------------------------------------------------------------------
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CGTCATAGACTGTGGAAAGGCAAAGGAAACAAGTTACGATGCTCTAAACAAGTTGGCTTGCCTGTTACCATCATGGATTTCCAAGGCTTCAGCTCATCAGgtattcattttcatatcatgtg---aattcaatgactaactagaaagtttcctcctctctcttacaaaaatatggctgtgacttttggccatagatgatgtcatattggttagtttcttattggaagttctctatgtttttatggtgtaatatttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169076558|gb|FE484665.1|FE484665EST: AGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAG AGAAGAGGACGAGCCGGAAGGGTGCAACCTGGAATTTGTTTTCATCTCTAC
genomic: AGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAGgtctgaattt ... tatttgccagAGAAGAGGACGAGCCGGAAGGGTGCAACCTGGAATTTGTTTTCATCTCTAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTTATCGACTGTGGGAAAGCTAAGGAAACTAGCTATGATGCTCTTAACAAGCTGGCGTGCCTTCTTCCATCCTGGATATCCAGGGCTGCTGCTCATCAGgtctgaatttacgtccttggttcttagctgaaggatttctagcacattttcttgcttttatttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT