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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGCTTGATAGAGGAACATGACGTTATTTTCCTTTTAACCGATACAAGGGAAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgtttacctcattctcgattatgatcctaaccgccaccatggcag

Basic information

species Selaginella moellendorffii
transcript EFJ38728
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38728 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 12
------AAGCTTGATAGAGGAACATGACGTTATTTTCCTTTTAACCGATACAAGGGAAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgtttacctcattctcgattatgatccta--accgccaccatggcag----------------------------------------------------------------------------------------------------------------------
          ||||| ||    ||||| |   ||||| |  | || ||||||||||||||||| |||||||||||  || | |||||    ||| |  |   | |    | |    | || ||||||   ||| |  |  |   || ||   | ||                                                                                                                          
CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgttgatccctttaatctcacttcattcaaaattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcctatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169101229|gb|FE501960.1|FE501960
EST:     AAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAG                         -T--T-ATAAATGCTGCACTTGGCTTCGACTCCTTCGTCGTCATGCGGCAT
genomic: AAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgt ... accatggcagATAGTTATAAATGCTGCACTTGGCTTCGACTCCTTCGTCGTCATGCGGCAT
EST: gi|169077706|gb|FE485384.1|FE485384
EST:     AAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAG                         ATAGTTATAAATGCTGCACTTGGCTTCGACTCCTTCGTCGTCATGCGGCAT
genomic: AAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgt ... accatggcagATAGTTATAAATGCTGCACTTGGCTTCGACTCCTTCGTCGTCATGCGGCAT