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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACCTTGATAGAGGAACATGACGTTATTTTCCTTTTAACCGATACAAGGGAAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgtttacctcattctcgattatgattctaaccgccaccatggcag

Basic information

species Selaginella moellendorffii
transcript EFJ31414
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31414 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: Vv10s0003g01150.t01 (Vitis vinifera), 5'ss of exon 12
------AACCTTGATAGAGGAACATGACGTTATTTTCCTTTTAACCGATACAAGGGAAAGTCGCTGGCTTCCAACTATTTTGTGTGCAGCGGCTGAGCAATCTAAGgtatctttgtttacctcattctcgattatgattcta--accgccaccatggcag----------------------------------------------------------------------------------------------------------------------
          ||||| ||    ||||| |   ||||| |  | || ||||||||||||||||| |||||||||||  || | |||||    ||| |  |   | |    | |    | || ||||||   ||| |  || |   || ||   | ||                                                                                                                          
CCTTTGTGAATTGATTGAATCTCATGATGCAGTTTTCTTGCTGACTGATACAAGGGAAAGTCGATGGCTTCCAACACTTCTTTGTGCCAATGCTAACAAGgttgatccctttaatctcacttcattcaaaattttatttttggcactgcactcttgattcattcaagcttgggtcaagttttaatcaagcatgattctcatgtgtctggcctgaatagttgtactgttgattctttgagaaagtatcttaattttgtgtcattttttttcctatgcag