Sequence
atgc intronic sequence ATGC exonic sequenceTCTGGGGATACTTTGCATTCATGTCAATCGAAAGTCTTCCAGGAAACCAGTTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACATgtaagtttcaatcacttctccttggtttcttggtttctctacaatctttctaactgttagaacttttaccag
Basic information
species | Selaginella moellendorffii |
transcript | EFJ30827 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EFJ30827 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA15G01390.1 (Glycine max), 5'ss of exon 10
TCTGGGGATACTTTGCATTCATGTCAATCGAAAGTCTTCCAGGAAACCAGTTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACATgtaagtttcaatcacttctccttggtt-tcttggtttctctacaatctttctaactgttagaacttttaccag-----------------------------------------
|||||||||| ||||| | |||| | || || |||||||||||||| || ||||||||||| || ||||| || | || | | | | |||| |||||| | | ||| | || | | || | | ||| |||| | | ||| |
TCTGGGGATATTTTGCTTACATGGCCATTGATAGTCTTCCAGGAAATCAATTCTGGGAAAGGATCCTACTTCTTTTTGTAACACCTAGTAGGTGGTACAAgtaagtgaaagttactattgtttcatcattttcacaaaagcatgaaacttccg-ctgtcaatagtttcattcaattaattctctttctaacacccaaatatatatttttggcag
upper sequence: EFJ30827 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: PP1S38_161V6.1 (Physcomitrella patens), 5'ss of exon 10
TCTGGGGATACTTTGCATTCATGTCAATCGAAAGTCTTCCAGGAAACCAGTTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACATgtaagt--ttcaatc------acttctccttggtttcttggtttctctacaatctt--tctaac-tgttaga-acttttaccag----------------------------------------------------------
| ||||| |||||||| | |||| | || |||||||||||||||||||||||||||| |||| | || ||||||| | | ||||| || | |||||| ||||| | || || | | || | | || | | | |||| | | | | | ||
TGTGGGGCTACTTTGCTTACATGGCCATTGAAAGTCTTCCAGGAAACCAGTTCTGGGGAAGAATTTGTCTACTCTTCAGCTCCTCCGCTAAGCGGTATAAgtaagtgattcaacagatgaaagttaaaagtgatagacaaataaaattaaagtattaatatgatgtgttgggtagtgtctctagctctgatgggtccgcctctgtgatgatgtcctgaatacgttgttgatgtgttactcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169026030|gb|FE435292.1|FE435292EST: TTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACAT GGCTGTGGAAGAAGGCCACTTATCATTCCTCAAAGTCGTCCCTTTCAAGGC
genomic: TTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACATgtaagtttca ... cttttaccagGGCTGTGGAAGAAGGCCACTTATCATTCCTCAAAGTCGTCCCTTTCAAGGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCTGGGGATACTTTGCATTCATGTCAATCGAAAGTCTTCCAGGAAACCAGTTCTGGGAAAGATTCAAGCTTCTCTTCACTGCTCCAAACAAGCGATACATgtaagtttcaatcacttctccttggtttcttggtttctctacaatctttctaactgttagaacttttaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT