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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctccgttaagatttgtgtattaacgtctattgatgcag

Basic information

species Selaginella moellendorffii
transcript EFJ30678
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgta------aggtgtgagctccgttaagat-----ttgtgtattaacgtctattgatgcag-------------------------------------
|||    |||   || ||||||||| |||| || |||||||| ||||| || || |||||||| |||||||| |||||||| ||||||||||| || ||||||      |    | | ||   | ||||         ||   |     ||||   ||  |                                     
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttactactgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgta--aggtgtgagc--tccgttaagatttgtgtattaacgtctattgatgcag-------------------------------------------------------------------------------------------
|||   |||    || ||  |||||||||| || |||||||| ||||| || ||||||||||| ||||| || |||||||| |||||||| || || ||||||  |  | | | |  |   |||     |  | |||   ||  | | ||   |                                                                                           
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctc----cgttaagatttg-tgtattaacgtctattgatgcag------------------------------------------------------------
 ||   |||    |||||  | ||| |||| || |||||||| | ||| ||||| ||||| || ||||| || ||||| || ||||||||||| ||||||||| | ||  |||||    |   || ||||| | | || |  ||  ||   |                                                               
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctg-aagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggt---gtgagctccgttaagatttgtgtattaacgtc-tattgatgcag------------------------------------------
||||   ||    || ||  |||| ||||| || || ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || |||||||||   |    | |       ||| |  |    || |      || | ||                                              
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgtactataaaataaatcataataaaaaattgtcatcactacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA07G10190.1 (Glycine max), 5'ss of exon 13
--TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctccgttaagatttgtgtattaacgtctattgatgcag---------
   | | | ||    ||   ||| || ||||| ||||||||||| || || || ||||| ||||| ||||| ||||||||||  |||||||| || || ||||||||     | ||   |    |    | |||| |  |  ||| |    |         
GTGTATGTTGAAATACAAGATTTTATACGATCAGTGCTTGATGGCTTTAATGTATGTATATTTGCTTATGGCCAGACTGgtttaggaaaaacttacacaatggtaagc----aactttatattcacacatatattgattttaatttaattcgccgtcttag

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctccgttaa-gatttgtgtatta-acgtcta--ttgatgcag----------------------
 ||   |||  | || || ||||||||||| || |||||||| | ||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||| |   |     |  |||| | ||| | | ||     ||||   | ||  |                       
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctccgttaagatt----tgtgtattaacgtctattgatgcag-------------------------------
|||  | ||| | |  || || ||||||||  | |||||||| |  || || ||||| ||||| ||||| |||||||||||||||||||| ||||| |||||||  |   ||||   ||  | |     | ||  |||||   |  | ||                                   
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtgagctccgttaaga--tttgtgtattaacgtctattgatgcag------------------------------------------------
|||  | ||| | |  ||| ||||||||||  | |||||||| | ||| || ||||| ||||| ||||| ||||| ||||||||||| || ||||| ||||||||      |    |||  |   ||| | |||| | |  |  |||  |                                                  
TTTCTTAGATACTCGACCTATGATTCGATCCATTCTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTATACGATGgtaagaaacatgtctagttttgttctttatatatttatgcatcatgagtctccaatttctctttgccaaaaaaaaaagagtctcgaatttctaaccattt

upper sequence: EFJ30678 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagg------tgtgagctccgtt-aagatttgtgtattaacgtctattgat-gcag---------------------------
 ||| | ||  | || || || |||||||| || |||||||| | ||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||| |       | |    | | |  || |  | |||   |  |  || |  | | |                            
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169097707|gb|FE499293.1|FE499293
EST:     TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATG                         ACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA
genomic: TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtg ... attgatgcagACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA
EST: gi|169078595|gb|FE487027.1|FE487027
EST:     TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATG                         ACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA
genomic: TCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaaggtgtg ... attgatgcagACAGGGCCAAGTTCAACTGCAAAACAAGATTGGGGGGTTAACTACCGAGCA