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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGACTCATGGTAACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatctctgttccaaaaactctacgagctaagattttcaattatgaacacag

Basic information

species Selaginella moellendorffii
transcript EFJ30498
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169058050|gb|FE463958.1|FE463958
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169067534|gb|FE475263.1|FE475263
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169106825|gb|FE508773.1|FE508773
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169066459|gb|FE474682.1|FE474682
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169058051|gb|FE463959.1|FE463959
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169065717|gb|FE476205.1|FE476205
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169045643|gb|FE452604.1|FE452604
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169046057|gb|FE453954.1|FE453954
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169035664|gb|FE445434.1|FE445434
EST:     ACTCCTCCCAGGCCATTTGACATTTGGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169059961|gb|FE467323.1|FE467323
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169057472|gb|FE465776.1|FE465776
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169112479|gb|FE512756.1|FE512756
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169088621|gb|FE495979.1|FE495979
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169056996|gb|FE466223.1|FE466223
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169042322|gb|FE452870.1|FE452870
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169036857|gb|FE444974.1|FE444974
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169066183|gb|FE475683.1|FE475683
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169073090|gb|FE484143.1|FE484143
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169019369|gb|FE427679.1|FE427679
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169088622|gb|FE495980.1|FE495980
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169067159|gb|FE474927.1|FE474927
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169035665|gb|FE445435.1|FE445435
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGA
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGA
EST: gi|169044151|gb|FE452153.1|FE452153
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169029047|gb|FE437550.1|FE437550
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169035271|gb|FE443741.1|FE443741
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169078707|gb|FE486515.1|FE486515
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169059960|gb|FE467322.1|FE467322
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169078708|gb|FE486516.1|FE486516
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169020173|gb|FE428235.1|FE428235
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169106600|gb|FE504635.1|FE504635
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169067160|gb|FE474928.1|FE474928
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169066245|gb|FE475199.1|FE475199
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169067533|gb|FE475262.1|FE475262
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169106824|gb|FE508772.1|FE508772
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169029665|gb|FE437336.1|FE437336
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169097503|gb|FE497945.1|FE497945
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169104416|gb|FE503752.1|FE503752
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169111757|gb|FE511956.1|FE511956
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169067096|gb|FE474474.1|FE474474
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169069054|gb|FE477746.1|FE477746
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169037822|gb|FE442533.1|FE442533
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169054114|gb|FE462349.1|FE462349
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169044380|gb|FE453318.1|FE453318
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169100332|gb|FE501129.1|FE501129
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
EST: gi|169066182|gb|FE475682.1|FE475682
EST:     ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAG                         CAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG
genomic: ACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 54

ATGGGACTCATGGTAACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatc ... atgaacacagCAAAGCGATTATAGAATCGATGCGAAGGAGGGCTCACATTATGACTGATGGATTCAACAAGTGCGAGGACGTAGTTTGTAACTTCACAGAAG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATGGGACTCATGGTAACTCCTCCCAGGCCATTTGACATCTCGTATCCTCAGTACCAGGCCGAAAGgtagttaatctctgttccaaaaactctacgagctaagattttcaattatgaacacag

- - - - - - - - CTCCTC