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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatttgtgtattaacgtctattgatgcag

Basic information

species Selaginella moellendorffii
transcript EFJ28715
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaa-----gctgtg-agctccgttaggat-----ttgtgtattaacgtctattgatgcag-------------------------------------
||| ||| || ||||||||| |||| || |||||||| ||||| || || |||||||| |||||||| |||||||| ||||||||||| || |||||| |||| | || | | || || | |||| || |
TTTCTCCGATATCCAACCTTTGATTAGATCAGTTCTTGATGGATTCAATGTTTGCATTTTTGCATATGGACAAACTGGTTCAGGAAAAACATACACAATGgtatttactactgtttaactaattcaagacagcaaacctgctctgctaactatcattggggatattgtaaattgactctcttatcttttaccctttag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgta--agctgtgagc--tccgttaggatttgtgtattaacgtctattgatgcag-------------------------------------------------------------------------------------------
||| ||| || || |||||||||| || |||||||| ||||| || ||||||||||| ||||| || |||||||| |||||||| || || |||||| | || | | | | ||| | | ||| || | | || |
TTTCTCGGACATTCAACCGCTGATTCGATCAGTTCTTGATGGATTCAATGTTTGTATTTTTGCTTATGGTCAAACTGGTTCAGGAAAAACTTACACAATGgtactaacttttaccgatattttactggctcagcattgttgttaacttatattgatcttttttattggtattgtactggttcagcatgatgcactgctactaacttttgatcacttatgttctattccaataattttgttcttag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os02g13580.1 (Oryza sativa), 5'ss of exon 12
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctc----cgttaggatttg-tgtattaacgtctattgatgcag------------------------------------------------------------
|| ||| ||||| | ||| |||| || |||||||| | ||| ||||| ||||| || ||||| || ||||| || ||||||||||| ||||||||| |||| ||||| | | ||||| | | || | || || |
CTTCAAGGACATACAGCCACTAATTAGATCAGTTCTTGATGGCTACAATGTCTGCATTTTCGCATATGGGCAAACTGGATCAGGAAAAACATACACTATGgtacgctg-aagctcagggcaaaaacatttggtctgtttatttcagtttgcgtgccagaagatttctctacagtcactatgtgtttacaacgatctgtttctatcaatttctcag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GRMZM2G173700_T03 (Zea mays), 5'ss of exon 11
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatttgtgtattaacgtctattgatgcag--------------------------------------------------
|||| || || || |||| ||||| || || ||||| |||||||| ||||||||||| ||||| |||||||||||||| ||||| || ||||||||| || | | | | | || ||| | || | | ||
TTTTTCTGACATACAACCACTGATCCGATCAGTTCTGGATGGATTCAACGTTTGTATTTTTGCATATGGCCAGACTGGTTCTGGCAAAACTTACACTATGgta--ctataaaataaatcataataaaaa-attgtcatc-actacaatagtaatattactgattatgatatctgttttgttgttattatttaatctttag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA07G10190.1 (Glycine max), 5'ss of exon 13
--TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatttgtgtattaacgtctattgatgcag---------
| | | || || ||| || ||||| ||||||||||| || || || ||||| ||||| ||||| |||||||||| |||||||| || || ||||||||| | || | | | |||| | | ||| | |
GTGTATGTTGAAATACAAGATTTTATACGATCAGTGCTTGATGGCTTTAATGTATGTATATTTGCTTATGGCCAGACTGgtttaggaaaaacttacacaatggtaagc----aactttatattcacacatatattgattttaatttaattcgccgtcttag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA08G01800.1 (Glycine max), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttag-gatttgtgtatta-acgtcta--ttgatgcag----------------------
|| ||| | || || ||||||||||| || |||||||| | ||| || ||||| ||||| ||||| || ||||| || ||||| |||||||| |||||| || | | ||| | ||| | | || |||| | || |
ATTCAAGGACACTCAACCATTGATTCGATCTGTTCTTGATGGGTACAATGTTTGTATATTTGCTTATGGTCAAACTGGCTCGGGAAAGACATATACGATGgtatgcattatatccgtttaatgctttttatgttgcgtatctagcctaatttacttagcaactgcttttctactag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA13G33390.1 (Glycine max), 5'ss of exon 10
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatttgtgtattaacgtctattgatgcag------------------------------------
| | || || | || || ||||| || |||||||| || || || ||||| ||||| ||||| ||||||||||| || ||||| || || ||||||||| | || | || | | | | | | | | ||| ||
GTATGCTGACATACAAGCCTTTATACGATCAGTACTTGATGGGTTTAATGTATGTATATTTGCTTATGGCCAGACTGGTTCAGGGAAAACTTACACAATGgtaagc----aactttatatatatatatcattcatcattt-tagataaaggaattactcattctataagatgtcattatttcttag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: AT1G63640.1 (Arabidopsis thaliana), 5'ss of exon 14
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttaggatt----tgtgtattaacgtctattgatgcag-------------------------------
||| | ||| | | || || |||||||| | |||||||| | || || ||||| ||||| ||||| |||||||||||||||||||| ||||| ||||||| | |||| || | | | || ||||| | | ||
TTTCTTAGATACTCGACCATTAATTCGATCCATTCTTGATGGCTATAATGTTTGTATATTTGCCTATGGTCAGACTGGTTCTGGAAAAACTTATACAATGgtaaattacaagcttgattttgttaacgatatgctttaaccaatgattataagtttttctaacagtttctattttgcaaacacag

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: AT5G41310.1 (Arabidopsis thaliana), 5'ss of exon 12
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaagctgtgagctccgttagga--tttgtgtattaacgtctattgatgcag------------------------------------------------
||| | ||| | | ||| |||||||||| | |||||||| | ||| || ||||| ||||| ||||| ||||| ||||||||||| || ||||| |||||||| | ||| | ||| | |||| | | | ||| |
TTTCTTAGATACTCGACCTATGATTCGATCCATTCTTGATGGCTACAATGTATGTATATTTGCTTATGGCCAGACGGGTTCTGGAAAGACTTATACGATGgtaagaaacatgtctagttttgttctttatatatttatgcatcatgagtctccaatttctctttgccaaaaaaaaaagagtctcgaatttctaaccattt

upper sequence: EFJ28715 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: Vv02s0025g03480.t01 (Vitis vinifera), 5'ss of exon 15
TTTTCTGGATGCGCAGCCTTTGATTCGATCGGTGCTTGATGGTTTCAACGTCTGTATTTTTGCGTATGGACAGACTGGTTCTGGAAAAACATATACTATGgtaag------ctgtgagctccgtt-aggatttgtgtattaacgtctattgat-gcag---------------------------
||| | || | || || || |||||||| || |||||||| | ||| |||||||| ||||| ||||| || ||||| ||||||||||| |||||||||||| | || | | | | | | | ||| | | || | | | |
ATTTTTAGACACTCAACCATTAATTCGATCTGTACTTGATGGATACAATGTCTGTATATTTGCCTATGGTCAAACTGGCTCTGGAAAAACCTATACTATGgtatgtacccactttatttttcatccaaaaaatatgttaaagagattactatttgtacttcacactgttccttttgtttctccag