1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGAGAAGTGGGCGAAGCAGTCGAACGTGCAGTATAAGAACTTCGAGGAGCTGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacgagcttttaagttttctatgtccgagcaagtgttgagcgtggcttgtttgtcag
species | Selaginella moellendorffii |
transcript | EFJ26722 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGTGCAAGAAGAAAGAGGCGGAGAAGCAGATACTCCAATCCATGGCGCAG GTGGGCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAGEST: gi|169102589|gb|FE508568.1|FE508568
genomic: TGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacg ... tgtttgtcagGTGGCCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
EST: TGTGCAAGAAGAAAGAGGCGGAGAAGCAGATACTCCAATCCATGGCGCAG GTGGGCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAGEST: gi|169062086|gb|FE469678.1|FE469678
genomic: TGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacg ... tgtttgtcagGTGGCCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
EST: TGTGCAAGAAGAAAGAGGCGGAGAAGCAGATACTCCAATCCATGGCGCAG GTGGGCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAGEST: gi|169081832|gb|FE487445.1|FE487445
genomic: TGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacg ... tgtttgtcagGTGGCCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
EST: TGTGCAAGAAGAAAGAGGCGGAGAAGCAGATACTCCAATCCATGGCGCAG GTGGGCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAGEST: gi|169088887|gb|FE492865.1|FE492865
genomic: TGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacg ... tgtttgtcagGTGGCCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
EST: TGTGCAAGAAGAAAGAGGCGGAGAAGCAGATACTCCAATCCATGGCGCAG GTGGGCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAGEST: gi|169098740|gb|FE500252.1|FE500252
genomic: TGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacg ... tgtttgtcagGTGGCCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
EST: TGTGCAAGAAGAAAGAGGCGGAGAAGCAGATACTCCAATCCATGGCGCAG GTGGGCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAGEST: gi|169054875|gb|FE463479.1|FE463479
genomic: TGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacg ... tgtttgtcagGTGGCCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
EST: TGTGCAAGAAGAAAGAGGCGGAGAAGCAGATACTCCAATCCATGGCGCAG GTGGGCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
genomic: TGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacg ... tgtttgtcagGTGGCCAAGGAAGCGAAGTTGGAGAGGGTTGAGATTCCAGCGAAAGTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAGAAGTGGGCGAAGCAGTCGAACGTGCAGTATAAGAACTTCGAGGAGCTGTGCAAGAACAAAGAGGCGGAGAAGCAGATAGTCCAATCCATGGCGCAGgtaaaagacgagcttttaagttttctatgtccgagcaagtgttgagcgtggcttgtttgtcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT