1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAACCTGTTGGAATCCATGCCAACGGCACCCATTTTTGTCGGGAATAAAGCCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCGgtaagcaatggtttctctctctctcttttttcttcttcttcgcgctcacacttttatactggttttgtag
species | Selaginella moellendorffii |
transcript | EFJ20887 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCG AACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGAEST: gi|169019777|gb|FE426656.1|FE426656
genomic: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCGgtaagcaatg ... ggttttgtagAACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGA
EST: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCG AACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGAEST: gi|169019778|gb|FE426657.1|FE426657
genomic: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCGgtaagcaatg ... ggttttgtagAACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGA
EST: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCG AACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGAEST: gi|169094253|gb|FE495024.1|FE495024
genomic: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCGgtaagcaatg ... ggttttgtagAACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGA
EST: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCG AACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGA
genomic: CCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCGgtaagcaatg ... ggttttgtagAACATAGATGTCATGGACTACTCGCTACTCGTTGGGATTGACGAAGAACGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCTGTTGGAATCCATGCCAACGGCACCCATTTTTGTCGGGAATAAAGCCAAGAGGCTTTTGGAGCGAGCGGTATGGAACGACACCTCATTCCTTGCGgtaagcaatggtttctctctctctcttttttcttcttcttcgcgctcacacttttatactggttttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG