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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCTCTGTTTATGGCAGAAAACAAAGCGAGTGGGATCAATTAGCAAGCTGGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtttgcgaattattcactcgtttgtcttctacatgctttgcgttcatgcag

Basic information

species Selaginella moellendorffii
transcript EFJ17267
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ30909 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA08G40690.1 (Glycine max), 5'ss of exon 12
GATCTCTGTTTATGGCAGAAAACAAAGCGAGTGGGATCAATTAGCAAGCTGGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtt-tgcgaattattcactcgttt--------gtcttctacatgctttgcgttcatgcag----------------------------------------
||||||||||||||| |||||||| || ||||||| |||  | || || ||| |||| ||||| | | | |||||| |||| | ||| ||||||||||||||  ||  | | ||   || | ||        || |||||   | || |  | ||   |                                         
GATCTCTGTTTATGGAAGAAAACAGAGTGAGTGGGGTCAGCTGGCTAGTTGGTTTGTTAACAATGCTCTTTATAGTAAGAATGCCGTATGGCTAATCCAGgtagtgtaattcatcttctagcttttgatccagttttctatcagtttggtttacactaacttcctgtgagtttatggtaaaagttatttccattatgaca

upper sequence: EFJ30909 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: AT2G38280.1 (Arabidopsis thaliana), 5'ss of exon 11
GATCTCTGTTTATGGCAGAAAACAAAGCGAGTGGGATCAATTAGCAAGCTGGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtttgcgaattattcactcgtttgtcttctacatg-ctttgcgttcatgcag-----------------------------------------------------------------------------------
 || ||| | ||||||||||||   ||||||||||| ||| | || || |||||||||||||| ||| | || |||||||| || |||||| |||| |||||| || |  | ||   |   |||| | || |||| | || | |   || |                                                                                    
AATATCTATATATGGCAGAAAAATGAGCGAGTGGGACCAACTCGCTAGTTGGATTGTGAACAATGATCTATACAGTGAGAATGTTGTCTGGTTAATTCAGgttagccatctctttgat-acttgtgtgctccatgtccttccatgagtgtatgtgttttttttgtctccgtgtgtttgtaacatgactgctaactgagctatattttccttgttttctgtttgtctgctcactag

upper sequence: EFJ30909 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: Vv08s0105g00570.t01 (Vitis vinifera), 5'ss of exon 11
GATCTCTGTTTATGGCAGAAAACAAAGCGAGTGGGATCAATTAGCAAGCTGGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgt-ttgcgaattattcactcg---tttgtcttctacatgctttgcgttcat--gcag-------------------------------------------
||| ||  | ||||||||||| ||||| |||||||| ||| | || || ||||| ||||| || |||||||| |||||||| || || ||| | || ||||| || |    ||| |    |   |||  ||| ||  |   ||   || |   | ||                                           
GATATCAATATATGGCAGAAAGCAAAGTGAGTGGGACCAACTTGCCAGTTGGATAGTGAATAATGATTTGTACAGTGAGAATGTTGTTTGGTTGATTCAGgtatttccttgtatccctatgaaatttcccttataagtttattttatttaccggtaggttatatacagtaaaaaagtccctgtgcctgtgcacacatctt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169074137|gb|FE482382.1|FE482382
EST:     GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAG                         CTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT
genomic: GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtttgcgaat ... gttcatgcagCTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT
EST: gi|169066741|gb|FE473300.1|FE473300
EST:     GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAG                         CTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT
genomic: GGATTGTGAACAACGATTTGTATAGTGAGAACGTCGTCTGGCTAATCCAGgtttgcgaat ... gttcatgcagCTTCCGCGCTTGTACAATGTTTATTATGATATGGGCATTGTTACCTCTTTT