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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGCTGACAGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttcttcgcaagctcaaagtttgcaaaactcactcaaagcttgtggaaacgttccag

Basic information

species Selaginella moellendorffii
transcript EFJ15933
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169094264|gb|FE495542.1|FE495542
EST:     AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169055059|gb|FE461934.1|FE461934
EST:     CACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: CACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169088352|gb|FE492070.1|FE492070
EST:     AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169060188|gb|FE468174.1|FE468174
EST:     AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169023566|gb|FE430554.1|FE430554
EST:     AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169027721|gb|FE434858.1|FE434858
EST:     AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169020581|gb|FE428786.1|FE428786
EST:     GATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: GATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169055058|gb|FE461933.1|FE461933
EST:     CACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: CACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169088783|gb|FE492813.1|FE492813
EST:     AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
EST: gi|169094263|gb|FE495541.1|FE495541
EST:     AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACG                         GATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA
genomic: AGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 21 (upstream exon), 35 (downstream exon)
Score: 7

ATTGCTGACAGGATCCATTCTCGCGCACGAACTAATGCACGCATGGCTCCGACTGAACGgtaaagttct ... aacgttccagGATACCCGAGCCATTTGAATCCGGTGGTGGAAGAAGGCATTTGCCAGGTGATGGCGCACACTTGGCTGGAGTCGCAGATTGGATCGTCGAGCAGCTCCTC




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