Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattatagttcttgccgccctgaagcgcttttcttttctgaag

Basic information

species Selaginella moellendorffii
transcript EFJ05985
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: LOC_Os02g25580.2 (Oryza sativa), 5'ss of exon 6
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgagga---ttatagttcttgccgccctgaagcgcttttcttttctgaag----------------------------------------------
 |||| ||| | || ||||| ||||| ||||| || |||||||||||||||||| | || || |||||||| || ||  ||||||||||     || |  || |        | | |     |||||  |||  |                                              
ATTGCACCAATCATTCATGAATGGACATATGACGCGATGTGCCATGATCTTCTATGTATGGATGGCAACAAGTATGTCCATGAGgtgagagagtttctttttttatatatttttatgtaacattcttccctgttgtttcatttgatggttattccattcttatgtgtgactgaaagaaaag

upper sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GRMZM2G012942_T01 (Zea mays), 5'ss of exon 10
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattatagtt-cttgccgccctgaagcgcttttcttttctgaag------------------------------------------------------------------
 |||| ||| |||| |||||||||||||||||||||||||||||||||||  |  | || || |||||||| |||||  | |||||||| |    ||   | | | | | |  |  |    ||  |  |  |                                                                   
ATTGCACCAATTATTCATGAGTGGACGTATGATGCTATGTGCCATGATCTATTGTGTATGGATGGCAACAAGTACGTGCAAGAGgtgagtacatcagcagcatacagtcttacactgtacctcactagtttaccttattcagttcttactatgtttttgatgcatgactcttaaaatttatgccaccctcaaacaatag

upper sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GRMZM5G830776_T01 (Zea mays), 5'ss of exon 10
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattata-------gttcttgccgccctgaagcgcttttcttttctgaag-------------------------
 | || ||  |||| ||||| ||||| |||||||| |||||||||||||| || |  || || |||||||||||| |||||||||| |   | |||        ||  ||     |  |  | ||||  |||||| |                           
ATAGCACCTGTTATTCATGAATGGACCTATGATGCAATGTGCCATGATCTACTCGAAATGGATGGCAACAAATACATTTATGAGgtaattgtcatatcatattattagtgatatacaaattctctttaattttcttatatattagtgttattttatattgcaag

upper sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GRMZM2G052880_T01 (Zea mays), 5'ss of exon 10
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggat-----tatagttcttgccgccctgaagcgcttttcttttctgaag-----------------------------------------------
 |||| ||| |||| ||||| ||||| |||||||||||||| |||||||| ||  | || || |||||||| || ||| |||||||||| ||      | | ||  ||  |   |    |   |||   | |    |                                               
ATTGCACCAATTATTCATGAATGGACTTATGATGCTATGTGTCATGATCTGCTTTGTATGGATGGCAACAAGTATGTTCATGAGgtgagcatataaacacacttgctgatgttttagtccctgtttggatcccttggtctaaagtttagccactaaactttagatcactttaggtcttgatgct

upper sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA03G02740.1 (Glycine max), 5'ss of exon 10
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattatagtt-cttgccg--ccctgaagcgcttttcttttctgaag-------------------------------------------------
 |||| ||  | || ||||| ||||| ||||||||||||||||||||| |  |    || || ||  | |||||  |  |||||||  |  || |  ||  |||||   ||||  | |   | |       |                                                    
ATTGCACCTGTCATTCATGAATGGACCTATGATGCTATGTGCCATGATTTGTTGACTATGGATGGAGATAAATATATGCATGAGgtatgacttttgcttgtttgcccttcccttcatcatgtatacaagtcggccaagaataaggctactaaaacttctaacaaaaagttatttactaagtttt

upper sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: GLYMA01G34340.1 (Glycine max), 5'ss of exon 5
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattata-------gttcttgccgccctgaagcgcttttcttttctgaag---------------------------------------------
 |||| ||  | || ||||| ||||| ||||||||||||||||||||| |  |    || || ||  | |||||  |  |||||||  |  || |        |  ||| ||  | | | |     |  |   |  |||                                             
ATTGCACCTGTCATTCATGAATGGACCTATGATGCTATGTGCCATGATTTGTTGAATATGGATGGAGATAAATATATGCATGAGgtatgacttttgcttgtttgcccttcccttcatcatgtatgctggtcggcccaaggataagactactaaagcttcaaacaaaaaattatttactaacaat

upper sequence: EFJ05985 (Selaginella moellendorffii), 5'ss of exon 10
lower sequence: AT1G12360.1 (Arabidopsis thaliana), 5'ss of exon 10
GTTGCGCCATTTATACATGAGTGGACGTATGATGCTATGTGCCATGATCTTCTAGGCATCGAAGGCAACAAATACGTTTATGAGgtgaggattatagttcttgccgccctgaagcgcttttcttttctgaag--------------------------------------------
 |||| ||  |||||||||||||||| ||||||||||||||||||||| | ||   ||| ||||| |||||||| ||  ||| ||| ||  ||  |||  || |||   | |     | |  |||| ||  |                                            
ATTGCCCCTGTTATACATGAGTGGACATATGATGCTATGTGCCATGATTTACTGAACATGGAAGGAAACAAATATGTACATGTGgtaag--ttcaagtcttttccgtatt-agttattgtgattttgtggtggctctcttcctggatactccatgtgatgttcatttagtttttag