Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCGAGGTGAATGAGCTCATCACTCAGCTAGAAGCTAAGAATCCAACTCCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtccttttagttcttcctcttttctctctctctctttgctcttgcctcttggtcgactaagattttcatctgattctag

Basic information

species Selaginella moellendorffii
transcript EFJ38264
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38264 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: AT4G04020.1 (Arabidopsis thaliana), 5'ss of exon 1
GAGCCGAGGTGAATGAGCTCATCACTCAGCTAGAAGCTAAGAATCCAACTCCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtccttttagttcttcctcttttctct-ctctctctttgctcttgcctcttggtcgactaagattttcatc--tgat-tctag-------------
|||| ||| | |  ||||||||||| ||||| ||  ||||||| || ||||||||||| | ||||||  ||    | ||||| ||||||||||||||||||||||| |||||||||||    || | ||   | |    | |  | ||   | |    | |  |  | |   | |  |||| ||||              
GAGCTGAGATCAGCGAGCTCATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCTAACGAAGCTCTGTTTCTCCTCAACGGCAAATGGATCCTCGCgtaagtacttttagttctgatactctcctaggcacggcatgtaatattagttttgtcccaaacattactcaaaccggtgatctctaagcttcgtctagga

upper sequence: EFJ38264 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: AT4G22240.1 (Arabidopsis thaliana), 5'ss of exon 1
GAGCCGAGGTGAATGAGCTCATCACTCAGCTAGAAGCTAAGAATCCAACTCCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctttt------agttcttcctctt----ttctctctctctctttgctctt--gcctcttggt-cgacta--agattttcatctgattctag----------------------
|||| ||  |    || || ||||| ||||| ||  ||||||| || |||||||||||||| |||||  |   | | ||||| |||||||||||||||||||||||  ||||      |   ||| |||||    | || |   |  | |   || |  |  ||| | | | | |   |||| |    ||| || |                        
GAGCTGAAATCGGAGATCTAATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGACGGAAGCTCTTTTCCTTCTCAACGGCAAATGGATCCTCGCgtaagtttttttccggtgaaaactttctcttgtagtcctgtagatagcatcattcgtaggattctggattcaaatggtagatctcgtgctgcttttgatttggttaaacctcttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169054335|gb|FE460780.1|FE460780
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169055318|gb|FE461127.1|FE461127
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169113538|gb|FE515073.1|FE515073
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169063605|gb|FE471711.1|FE471711
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169077595|gb|FE484857.1|FE484857
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169038793|gb|FE450186.1|FE450186
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169112027|gb|FE512252.1|FE512252
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169050628|gb|FE459670.1|FE459670
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169038389|gb|FE446090.1|FE446090
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169033566|gb|FE442118.1|FE442118
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169064667|gb|FE473686.1|FE473686
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169104760|gb|FE505381.1|FE505381
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169111221|gb|FE509613.1|FE509613
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169111713|gb|FE514018.1|FE514018
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169054336|gb|FE460781.1|FE460781
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169033565|gb|FE442117.1|FE442117
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169051269|gb|FE457619.1|FE457619
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169112028|gb|FE512253.1|FE512253
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169110014|gb|FE510525.1|FE510525
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169103691|gb|FE506888.1|FE506888
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169106028|gb|FE504388.1|FE504388
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169026634|gb|FE433920.1|FE433920
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169106058|gb|FE505653.1|FE505653
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169036562|gb|FE444133.1|FE444133
EST:     TGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: TGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169036561|gb|FE444132.1|FE444132
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTT
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTT
EST: gi|169102905|gb|FE505270.1|FE505270
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169104787|gb|FE505382.1|FE505382
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169047626|gb|FE455210.1|FE455210
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169110015|gb|FE510526.1|FE510526
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169077594|gb|FE484856.1|FE484856
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169111222|gb|FE509614.1|FE509614
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169038792|gb|FE450185.1|FE450185
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169106057|gb|FE505652.1|FE505652
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169107173|gb|FE506053.1|FE506053
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|70670748|gb|DN839325.1|DN839325
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169107174|gb|FE506054.1|FE506054
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169026633|gb|FE433919.1|FE433919
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169113537|gb|FE515072.1|FE515072
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169103692|gb|FE506889.1|FE506889
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169064666|gb|FE473685.1|FE473685
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169051283|gb|FE457620.1|FE457620
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
EST: gi|169055317|gb|FE461126.1|FE461126
EST:     CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGC                         ATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC
genomic: CCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 43

GAGCCGAGGTGAATGAGCTCATCACTCAGCTAGAAGCTAAGAATCCAACTCCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtcctt ... ctgattctagATACACTTCTTTCTCGGAGCTCTTTCCTCTCTTAGCAGCGGGAACTTTGCCGCTGGTAAAAGTTGGAGAGATCTCCCAGACTGTTGATTCCAACGCACTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAGCCGAGGTGAATGAGCTCATCACTCAGCTAGAAGCTAAGAATCCAACTCCAGCTCCGACCGAAGCATTGGCCGTGCTCAATGGCAAATGGATCCTCGCgtaagtccttttagttcttcctcttttctctctctctctttgctcttgcctcttggtcgactaagattttcatctgattctag

- - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTC