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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGCGTGTTCAAGCCCAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccctcgtcttctagggtttttcccccgcattcttgctgcgattggctgaattgcgtgagaatttggtttccag

Basic information

species Selaginella moellendorffii
transcript EFJ38261
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os03g01810.1 (Oryza sativa), 5'ss of exon 1
AAGGGCGTGTTCAAGCCCAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccctcgtcttctagggtttttcccccgcattcttgctgcgat-tggctgaattgcgtgagaatttggtttccag---------
||| || |  ||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||||| | || |  |||||| | || |||||| || | |||  |        ||||| |   | | |       ||     || | ||   ||     ||| |||   ||   |    ||         
AAGAGCCTCCTCAAGCCCAAGCCGACGCCGCAGCAGCAGCTTCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGATCGCCAGATCCGAGgttggggtttcattcttccattctctcttggatctatctgcccttccatacagcgatgatgc-tgatggttgaatccggagctagcgcag

upper sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os07g29630.1 (Oryza sativa), 5'ss of exon 1
AAGGGCGTGTTCAAGCCCAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccctcgtcttctagggtttttcccccgc---attcttgctgcgattggctgaattgcgtgagaat-ttggtttccag----------------
|||||  || | |||||  |||||||||| ||| |||||||||| ||||||||||||   |||||| | ||    |||  | | || |||||| || | ||| || |||| | ||| ||     |   ||  |||   |  |   || |    |      |||  |  |  | ||   |||||                 
AAGGGTCTGCTGAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGGGAGTGGCAGCGCAAGCTCCGCAACGAGTGCCGCGTCCTCGACCGCCAGATCCGAGgttcgctcccccatctcctcctcctcccccgacgcgcgacccgaccttcacgcgaggtctttgtctaggtgtgttctcttccatatgatcgggggggggg

upper sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G165195_T05 (Zea mays), 5'ss of exon 1
------AAGGGCGTGTTCAAGCC---CAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccctcgtcttctagggtttttcccccgcattcttgctgcgattggctgaattgcgtgagaatttggtttccag------------------
       ||||  |   |  |||        |  |  |       |   ||||  |    |  |       ||  | ||  ||  ||  || || |    |||| | |   | | ||   |  |  |    |     || | |||        |||| |||| |    || |  | |    ||  |  |                  
TCCCTCGAGGGAATAAGCCCGCCGCGTGAAGCTTCTTCTTGCATCCGAGTGCGGAATCACCTCCAATCTGCCCCTCGGGCCGCCGGCGCCGATGGAGA--AGgtgaagaacatgctcaagccgcggccgacg-----ccgcagcagcagctgcgcgagtggcagcgccgcctccgcaacgagtgccgcgtcctcgaccgtcagatcc

upper sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G165195_T01 (Zea mays), 5'ss of exon 1
AAGGGCGTGTTCAAGCCCAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccct-----------cgtcttctagggtttt--tcccccgcat-tcttgctgcgattggctgaattgcgtgagaatttggtttccag------
|||  | || |||||||  |||||||||| ||| |||||||||||||||||||||||||||||||| | ||    |||  | | || || ||| || | ||| | | |||            | ||| ||    || |  |||||| ||| || | |  |   |  |  |      ||   ||  || |           
AAGAACATGCTCAAGCCGCGGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGTGCCGCGTCCTCGACCGTCAGATCCGAGgtcctacccccgaacgcgcccgcatctccttcccttctcgtcccccacatctccttcccctggtctccaagggaactggcgatcgggctcgtgtggacgg

upper sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G042552_T02 (Zea mays), 5'ss of exon 1
AAGGGCGTGTTCAAGCCCAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgatccctcgtcttctagggtttttcccccgcattcttgctgcgattggctgaattgcgtgagaatttggtttccag
||| || |  | ||||| | ||||||||| ||| |||||||||||||||||||||||||||||||| | || |  |||||| | || || ||| || | ||   |    | || |||||    || | |   | ||  ||  |       |  ||  | |  | |  |            
AAGAGCCTTCTGAAGCCGAAGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagcccg-cttctcccattctccggacccagactcaccctcgccgagtg--tggactaacgaa-----------

upper sequence: EFJ38261 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G042552_T01 (Zea mays), 5'ss of exon 1
AAGGGCGTGTTCAAGCCCAGGCCGACGCCACAGGAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCCAGGAAGCTCGCAACGTTGAACGCCAGGTCAGGGgtacgat--ccctcgtcttctagggtttttcccc---cgcattcttgctgcgattggctgaattgcgtg-agaatttggtttccag----------------
||| || |  | ||||| | ||||||||| ||| |||||||||||||||||||||||||||||||| | || |  |||||| | || || ||| || | ||   |    ||| | ||| | |   |     |||   | ||  || || | |  |||   ||    ||  ||  | | |    |                  
AAGAGCCTTCTGAAGCCGAAGCCGACGCCGCAGCAGCAGCTGCGCGAGTGGCAGCGCCGCCTCCGCAACGAGGGCCGCAACATCGACCGGCAGATCCGAGgcgaggcagcccgcttctcccattctccggacccagactcaccctcgccgagtgtggactaacgaagtccaggctgtcgccctcgacctcgatgtgctgcag