1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTTCTACTGGGATCTTGGCGGGGAGCTGGGGAGGGCGGCTTTCCCACCATCAAATCGTTCGGCTATGGCGAGGAAATTCGCCTCTGGCACACTGGAAAGgtacttttgggatttttccttggaatggcttgcttctagaggagaaagcttctcttttgtgtgtccatctctcgatcaattcctttcgctgcgtggaaag...
species | Selaginella moellendorffii |
transcript | EFJ37014 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TCAAATCGTTCGGCTATGGCGAGGAAATTCGCCTCTGGCACACTGGAAAG CCAGTGATGGCCTACACGCAAAAGACATGGAAGGCATCGTCCGGGGAGCCTEST: gi|169112243|gb|FE509959.1|FE509959
genomic: TCAAATCGTTCGGCTATGGCGAGGAAATTCGCCTCTGGCACACTGGAAAGgtacttttgg ... tgttttccagCCAGTGATGGCCTACACGCAAAAGACATGGAAGGCATCGTCCGGGGAGCCT
EST: TCAAATCGTTCGGCTATGGCGAGGAAATTCGCCTCTGGCACACTGGAAAG CCAGTGATGGCCTACACGCAAAAGACATGGAAGGCATCGTCCGGGGAGCCT
genomic: TCAAATCGTTCGGCTATGGCGAGGAAATTCGCCTCTGGCACACTGGAAAGgtacttttgg ... tgttttccagCCAGTGATGGCCTACACGCAAAAGACATGGAAGGCATCGTCCGGGGAGCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTTCTACTGGGATCTTGGCGGGGAGCTGGGGAGGGCGGCTTTCCCACCATCAAATCGTTCGGCTATGGCGAGGAAATTCGCCTCTGGCACACTGGAAAGgtacttttgggatttttccttggaatggcttgcttctagaggagaaagcttctcttttgtgtgtccatctctcgatcaattcctttcgctgcgtggaaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttttcc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggagaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcgct