Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACAAAGGTATTCAAGATGGTTCTCACAATGACCTCCGAGGCGGACACCAGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaaaaccatcccgagttctcgaccaaaatcgcattttttcgcctcgccacgagtggatctggccctgccgagatccatcctgggatttgtctctcgagatgtcgaggctcacttcttttcatttctctag

Basic information

species Selaginella moellendorffii
transcript EFJ36644
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169076418|gb|FE485006.1|FE485006
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169075461|gb|FE483095.1|FE483095
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169060617|gb|FE467355.1|FE467355
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169060384|gb|FE467915.1|FE467915
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169066370|gb|FE473046.1|FE473046
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169093055|gb|FE494166.1|FE494166
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169054363|gb|FE460808.1|FE460808
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169080213|gb|FE488385.1|FE488385
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169025802|gb|FE433101.1|FE433101
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
EST: gi|169025238|gb|FE432290.1|FE432290
EST:     AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAG                         GTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT
genomic: AGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCAT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 53

AAACAAAGGTATTCAAGATGGTTCTCACAATGACCTCCGAGGCGGACACCAGCCTCCAGTCCACGTTTGCTTCTCGCTACTCGCAATCCTCGGTGTCAAGgtaagaagaa ... atttctctagGTACCGCATTCCCGACCAAGAGACGCCCAAGGATGCCGCCTATCAGATCATCTCGGACGAGCTCATGCTGGATGGAAATCCTCGTCTCAATCTCGCCTCC




<











<


<