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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggtgtttctaagttgttcttcccaaggatttggagctcactctctttcttggcttccag

Basic information

species Selaginella moellendorffii
transcript EFJ36458
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtag----cctgtggtgtttctaagttgttcttcccaaggatttggagctcactct---ctttcttggcttccag--------------------------------
| ||||| ||||| |||||||| |||||||||||  | | ||||||||||||||||||||||||||||||||||||  | || |||||||| || || ||||      |      | ||| | |  | || || |       |   |||| |  ||   |||  ||       |                                 
GTATGGGGTTCATTCAGTCCAACCACTCTGTGATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAGGCTGCACGTATCAATGGTGTGAAGAGgtccggctctctcttttttttttacatatttttactgttatatctcagcttagcctgagcttgttttatccatatcaattcatttgttacaactaatggtcctacag

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os11g37890.3 (Oryza sativa), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtgg--tgtttctaagt-tgttcttcccaagg---atttggagctcactctctttcttggcttccag--------------------------
| ||||||||||| || |||||||||||||| ||  | | |||||||||||||||||| || |||||||| |||||| |  |||| ||||| ||||||||||| | | ||   || | ||   | |||   ||||| |    ||||    |  | |     | | || | | |                           
GGATGGGATTCATTCAATCCAATCACTCTGTTATCATGTACAACAACACCATGATCAGCTTTAACATGCTTGAGGCCGCTAGGATTAATGGTGTCAAAAGgtaacttttgaactggtgctggctctgtaaatcccatgttttatttttcaccaattgatgctataggatgctaagatctgttaaggtatataaagcctat

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgta-------gcctgtggtgtttctaagttgttcttcccaaggatttggagctcactctctttcttggcttccag-------------------------------------------------------------
| ||||| ||||||||||| ||||||||||||||  | | ||||||||||||||||||||| |||||||| |||||  | || |||||||| || || |||||          | |  ||   ||   || |  |||     | |    | ||  |    |    | |||                                                                  
GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcag

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggtgtttcta-agttgttcttc-ccaaggatttg-gagctcactctctttcttggcttccag-----------------------------
| ||||| |||||||||||||| ||||| || ||  | | |||||||||||||||||| || |||||||| |||||  |  | || || || ||||| |||||   |   |  |      || || ||||     |  ||  | |   | || ||  |       || ||                              
GGATGGGGTTCATCCAGTCCAACCACTCCGTCATCATGTACAACAACACCATGATCAGCTTTAACATGCTTGAGGCTGCTAGAATTAACGGCGTCAAGAGgtaatttccagcctcaaggtagctgctctttgtttatcatgcgtgcatttaccctggtgagctagtttcatatatattgcctccagtgctaaatctgttc

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggtgtttc----taagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag---------------------------------
| ||||| |||||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |  ||        |  ||| || | || |    | ||| |    |   ||||| | | ||   ||                                  
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgt----ggtgtttctaagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag----------------------------------
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |            |  ||| || | || |    | ||| |    |   ||||| | | |||  ||                                   
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggtgtttc----taagttgttct-tcccaaggatttggagctcactctctttct-tggcttccag-----------------------------------
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || || ||||      |  ||        |  ||| || | || |    | ||| |    |   ||||| | | |||  ||                                    
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv14s0030g02180.t01 (Vitis vinifera), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggtgtttctaagttgttcttcccaaggatt--tggagctcactctctttcttggcttccag------------------------------------------------------------------------------------------------------
||||||| |||||||||||||| || || || ||| | | ||| ||||| |||||||| ||||||||||| ||||| ||  |||||||||| || || ||||      || ||| |  || |||||||  ||  |  ||     || || |  | |    ||       |                                                                                                      
GAATGGGGTTCATCCAGTCCAACCATTCAGTTATTATGTACAATAACACAATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAATGGGGTTAAGAGgtt-----tgttgtcttcaatttgttctatcctggctttgactaagttctccatttgatatgaaaattggtttcatgtactcagcatttatctgtctaggagacgtaaatttactaatgaatttttctggtcctgagaattctctaatatctgattattccacattgtgcag

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgta---gcctgtgg----------tgtttctaagtt-----gttcttcccaag--gatttggagctcactctctttcttggcttccag------------
| ||||| ||||| ||||||||||||||||| ||  | |  |||||||| ||||| || ||||||||||| ||||| ||  | |||||||| || || ||||      |  |||          | ||| ||  ||     |||||| |||||  ||||||    | |    || | |        ||            
GTATGGGCTTCATTCAGTCCAATCACTCTGTTATCATGTATAACAACACAATGATTAGCTTCAACATGCTTGAGGCTTCAAGAATCAATGGGGTTAAGAGgtttgtctccttggattcactacttatttttagctttatcagttctttccaagttgatttgagaattatctactatttgaaaccaaagaatacttttttg

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 1
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgt--agcctgtggtgtttctaagttgttcttcccaagg-atttggagctcactctctttcttggcttccag--------------------------------
| ||||| |||||||||||||||||| |||| ||| | | |||||| ||||||||||| ||||||||||| || ||||| || |||||||| |||   ||||  |  ||    | |  |       || | ||  ||  ||||  |||||    |  ||||||  ||| |                                 
GCATGGGCTTCATCCAGTCCAATCACGCTGTCATTATGTACAACAATACCATGATCAGCTTCAACATGCTTGAAGCCTCACGCATCAATGGTGTCTCTAGgtgcatgctcctctctgcccttccaattttaccttagccatttccagctc---tttattcttgctttcgaaggtctctgcttatgtgcaatctctgtttctct

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 1
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgta---gcctgtggtgtttctaagttgttcttcccaaggatttggagctcactctctttcttggcttccag----------------------------------
| ||||| ||||||||||| || ||| | || ||| | | ||||||||||||||||||||||||||||||||| ||| | || ||||| || || |   |||    ||    |  ||   |   |||   || |||    || |    |||||   | |||  ||    ||                                  
GTATGGGCTTCATCCAGTCTAACCACGCCGTCATTATGTACAACAACACCATGATCAGTTTCAACATGCTCGAAGCCGCTCGCATCAACGGTGTTACCCGgtgcgcgctctcgcagtgctttctttgccattaccag---ttcgattttcacttcgtctct--gccattagtgggaattttgtttcttttattcctaattgcgtt

upper sequence: EFJ36458 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCCTCCCGGATCAATGGAGTCAAAAGgtagcctgtggt-gtttctaagttgttcttcccaaggatttggagctc--actctctttcttggcttccag-----------------------------
| ||||| ||||| |||||||| ||| | |||||  | | |||||||||||||||||| || ||||||||||||||| | || |||||||| |||    ||| | |     | |   ||   || | | || |      | | |||||    |||  || | |      |                              
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg