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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCGACCTTCGCCAAGCCAGAGAATGCTCTCAAGCGAGCGGAAGgtaatctctgtccttctcgtgaaatttcgtgtcgcagctcggggattgacaatcgctgctccag

Basic information

species Selaginella moellendorffii
transcript EFJ35771
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ35771 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S6_208V6.1 (Physcomitrella patens), 5'ss of exon 1
------------------------------------------------------ATGGCGACCTTCGCCAAGCCAGAGAATGCTCTCAAGCGAGCGGAAGgtaatctctgtccttctcg--tgaaatttcgtgtcgcagctcggggattgacaatcgctgctccag----------------------------------
                                                      ||||||||||| || || || || ||||||||||||||||| |||||||   ||||    ||  |  |     || | ||  | ||||     ||         |  ||  |                                  
CGCCCGGGACCCCTTTGCACTGGAGTGTTCGGTGGCGATTCGCCTCCTGCCACCATGGCGACCTTTGCGAAACCTGAAAATGCTCTCAAGCGAGCAGAAGgtatgatctgcttctcctgatttggggtttgggtttctgctcatacgttttttcctttttttcttgcgtgggaggtttgtccgtaggagcatgctcaatt

upper sequence: EFJ35771 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S74_122V6.1 (Physcomitrella patens), 5'ss of exon 1
ATGGCGACCTTCGCCAAGCCAGAGAATGCTCTCAAGCGAGCGGAAGgtaatctctgt---ccttctcgtgaaatttcgtgtcgcagctcggggat-tgacaatcgctgctccag--------------------------------
||| | || || || ||||| |||||||| ||||||||||||||||||   ||       ||  | | || | |||| |    |  |||     | |  |  || ||    |                                  
ATGTCAACTTTTGCGAAGCCCGAGAATGCCCTCAAGCGAGCGGAAGgtctcctgaaaacaccaccccttgcattttcctcctcctcctcctctctctctctctctctctctctctctctctctctctctctctctccctccctccc