1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACGGCGTGGCATGAAACCCTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcagcaatgccgctccctccttctcctctgatttgattcttccag
species | Selaginella moellendorffii |
transcript | EFJ34304 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGGCGACTCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGGEST: gi|169043108|gb|FE454022.1|FE454022
genomic: ATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: GAAACCCTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAG TTTGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGGEST: gi|70671143|gb|DN839720.1|DN839720
genomic: GAAACCCTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: GAAACCCTAGCTCTCTGGCAATGGCGACGCATATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGGEST: gi|169038061|gb|FE446659.1|FE446659
genomic: GAAACCCTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: CTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGGEST: gi|169103365|gb|FE507342.1|FE507342
genomic: CTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: ATGGCGACTCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGGEST: gi|169073958|gb|FE481670.1|FE481670
genomic: ATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: AATGGCGACGCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGGEST: gi|169067196|gb|FE474964.1|FE474964
genomic: AATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: CGCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGGEST: gi|169073959|gb|FE481671.1|FE481671
genomic: CGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: GAAACCCTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGGEST: gi|169034021|gb|FE444211.1|FE444211
genomic: GAAACCCTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: GCAATGGCGACGCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGGEST: gi|169055910|gb|FE465111.1|FE465111
genomic: GCAATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
EST: CGCAGATCAGCAAGAAGAGAAAG TTCGTCGCCGATGGAGTGTTCTACGCCGAGCTCAATGAGCTTCTCACGCGG
genomic: CGCAGATCAGCAAGAAGAGAAAGgtctgttcag ... attcttccagTTCGTCGCCGATGGCGTGTTCTACGCCGAGCTCAACGAGCTTCTCACGCGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGCGTGGCATGAAACCCTAGCTCTCTGGCAATGGCGACGCAGATCAGCAAGAAGAGAAAGgtctgttcagcaatgccgctccctccttctcctctgatttgattcttccag
- - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA