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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGGCGTCGAGAACTATCATGTGATCGAGCTCGTCGGCGAGGGATCGTTTGGGAAGGTCTACAAGGGAAGGCGCAAGTTCACTGGCCAGgttctgtgagctacattttgtttttcttgcttgcccctgatcgatcgatcgaccag

Basic information

species Selaginella moellendorffii
transcript EFJ33693
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os12g24550.1 (Oryza sativa), 5'ss of exon 2
----------ATGGGCGTCGAGAACTATCATGTGATCGAGCTCGTCGGCGAGGGATCGTTTGGGAAGGTCTACAAGGGAAGGCGCAAGTTCACTGGCCAGgttctgtgagctacattttgtttttcttgcttgcccctgatcgatcgatcgaccag--------------------------------------------------------------
          |||||  | ||  | || ||||| |||| |||||| || ||||| || || |||||||| |||| |||||||||||||| |||| ||||||||| |||  ||  |||  | |  |   |  ||     ||  | |  ||                                                                     
GTGGGTGGTGATGGGGATAGAAGATTACCATGTCATCGTGCTCGTTGGGGAGGGCTCCTTCGGGAAGGTGTACATGGGAAGGCGCAAGTACACTCGCCAGgttc-gtgctctggattccgctcgtacgg--tgaaatggaatggttaattcttttttcttttttttttctgctagttttgctcggaagtttgattgcttctgtttaaatttgtttcag

upper sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA20G16860.1 (Glycine max), 5'ss of exon 1
ATGGGCGTCGAGAACTATCATGTGATCGAGCTCGTCGGCGAGGGATCGTTTGGGAAGGTCTACAAGGGAAGGCGCAAGTTCACTGGCCAGgt---------tctgtgagctacattttgtttttcttgc---ttgcccctgatcgatcgatcgaccag------------------------
|||||||| |||||||| || || |||||||||||||||||||| || || |||||||| ||||||||||||||||||  ||| || |||||         |||      ||   ||| ||||||| |    | || | |   ||||   |    ||                         
ATGGGCGTTGAGAACTACCACGTCATCGAGCTCGTCGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGGCGCAAGCACACGGGACAGgtacgctactctcttccgattagggtttttttttctcgtgaatcgcacttttccgattactgtctcacttctgattttattcgatctctcag

upper sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA10G22860.1 (Glycine max), 5'ss of exon 1
ATGGGCGTCGAGAACTATCATGTGATCGAGCTCGTCGGCGAGGGATCGTTTGGGAAGGTCTACAAGGGAAGGCGCAAGTTCACTGGCCAGgttctgtgagctacatttt---gtttttcttgc---ttgcccctgatcgatcgatcgaccag------------------------
|||||||| |||||||| || || |||||||||||||||||||| || || |||||||| ||||||||||| ||||||  ||| || ||||| |      || |   ||   |||||||  |    | || | |   ||||   |    ||                         
ATGGGCGTTGAGAACTACCACGTCATCGAGCTCGTCGGCGAGGGTTCCTTCGGGAAGGTATACAAGGGAAGACGCAAGCACACGGGACAGgtacaccactcttcgaattagggtttttccggtgaatcgctcttttccgattactatctcacttctgattttattcgatctcttag

upper sequence: EFJ33693 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: AT1G50240.2 (Arabidopsis thaliana), 5'ss of exon 1
----------ATGGGCGTCGAGAACTATCATGTGATCGAGCTCGTCGGCGAGGGATCGTTTGGGAAGGTCTACAAGGGAAGGCGCAAGTTCACTGGCCAGgt------tctgtgagcta--cattttgtttttcttgcttgcccctgatcgatcgatcgaccag---------------------
          ||||| |||||| | ||||||||||| ||||| ||||| || ||||| ||||||| ||| ||||| ||||| |||||||  || ||||||||      |   || | |   |  |||||| |  | |  | |     |||     ||| |                         
GTGTTCAGATATGGGTGTCGAGGATTATCATGTGATAGAGCTTGTCGGTGAAGGATCTTTTGGGAGGGTTTACAAAGGAAGACGCAAGTATACCGGCCAGgtaaattgttgctgggttgttctctttgttatcatcggctacttaaaatcagctaatcaattcttaatttggtaatttttatcag