1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TAATCTTAGCATTCTTCTCAATCCCGTTCTTGGCTTGGCGATGGATCCCGGAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggagggatcctttagcaaaatttggtgctgggaatcactctagaatctagcgacaattgtgtaacgctcgctctttcattcgcattcgcag
species | Selaginella moellendorffii |
transcript | EFJ32771 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAG AATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACAEST: gi|169073594|gb|FE481332.1|FE481332
genomic: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggag ... gcattcgcagAATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
EST: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAG AATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACAEST: gi|169048931|gb|FE454930.1|FE454930
genomic: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggag ... gcattcgcagAATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
EST: AATGCTGCAGCGCCAGTATGTGGAGCTGATGCNAGCGTCGTTTCAGGAG AATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACAEST: gi|169105398|gb|FE507657.1|FE507657
genomic: AATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggag ... gcattcgcagAATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
EST: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAG AATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACAEST: gi|169060335|gb|FE468919.1|FE468919
genomic: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggag ... gcattcgcagAATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
EST: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAG AATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACAEST: gi|169060334|gb|FE468918.1|FE468918
genomic: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggag ... gcattcgcagAATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
EST: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAG AATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACAEST: gi|169073595|gb|FE481333.1|FE481333
genomic: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggag ... gcattcgcagAATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
EST: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAG AATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
genomic: GAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggag ... gcattcgcagAATCTCCTGGACGATCAGTTCTCGCAACTCCAGCAGCTCCAGGATCCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAATCTTAGCATTCTTCTCAATCCCGTTCTTGGCTTGGCGATGGATCCCGGAATGCTGCAGCGCCAGTATGTGGAGCTGATGCAAGCGTCGTTTCAGGAGgtaggaggagggatcctttagcaaaatttggtgctgggaatcactctagaatctagcgacaattgtgtaacgctcgctctttcattcgcattcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT