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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCTCGCAAGTTTTGTGTCGGTGGCAACTGGAAATGCgtaagtgctttgagctagcctggcttggatcatcgtcgacatggaagaatcaaacttctttttttttcttgtgtag

Basic information

species Selaginella moellendorffii
transcript EFJ31929
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ31929 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G030784_T01 (Zea mays), 5'ss of exon 1
-------------------------------------------------------------ATGCCTCGCAAGTTTTGTGTCGGTGGCAACTGGAAATGCgtaagtgcttt----------gagctagcctg--gcttggatcatcgtcgacatggaagaatcaaacttctttttttttcttgtgtag------------
                                                             |||   |||||||| |  ||||||||||||||||||||||||| | || |          || |     ||  |||   ||  |  |   |  |   |   | |   |  | ||||    | |||              
CCCTCTCTCTCTCTTCGCCGTCCGAAGCTCCGCACCCCAATCTAATCGACACCTCACCGAGATGGGCCGCAAGTTCTTCGTCGGTGGCAACTGGAAATGCgtaatttctcttcccctcgtggatcggatgtggggctctcatatttctgatcccgtttgcggctaggctagtgttttactctctgtgatacggtatagat

upper sequence: EFJ31929 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G030784_T02 (Zea mays), 5'ss of exon 3
------------------------------------------------ATGCCTCGCAAGTTTTGTGTCGGTGGCAACTGGAAATGCgtaagtgcttt----------gagctagcctgg--cttggatcatcgtcgacatggaagaatcaaacttctttttttttcttgtgtag------------
                                                |||   |||||||| |  ||||||||||||||||||||||||| | || |          || |     |||  ||   ||  |  |   |  |   |   | |   |  | ||||    | |||              
TTCGCCGTCCGAAGCTCCGCACCCCAATCTAATCGACACCTCACCGAGATGGGCCGCAAGTTCTTCGTCGGTGGCAACTGGAAATGCgtaatttctcttcccctcgtggatcggatgtggggctctcatatttctgatcccgtttgcggctaggctagtgttttactctctgtgatacggtatagat