1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CGAGAACGATGAGGCGATTGCGGTTATTCTTTCCGAGGAGTTGGCACAACTCGATGGAGGAGAAGTTGGCCGGCGGCTCACACACATGGAATCCATACCTgtaagtaggctgtatggatttttttcttctctccatggctgacttcttctttcttctccatagctgacttctttttggtgcacttctgtag
species | Selaginella moellendorffii |
transcript | EFJ31563 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GTTGGCCGGCGGCTCACACACATGGAATCCATACCT CATATCCCGAAGATAAATGGAGAGATACCGAGCCCGGACGCTGCCACACTCEST: gi|169036220|gb|FE445689.1|FE445689
genomic: GTTGGCCGGCGGCTCACACACATGGAATCCATACCTgtaagtaggc ... acttctgtagCATATCCCGAAGATAAATGGAGAGATACCGAGCCCGGACGCTGCCACACTC
EST: GGAGAAGTTGGCCGGCGGCTCACACACATGGAATCCATACCT CATATCCCGAAGATAAATGGAGAGATACCGAGCCCGGACGCTGCCACACTCEST: gi|169061695|gb|FE469885.1|FE469885
genomic: GGAGAAGTTGGCCGGCGGCTCACACACATGGAATCCATACCTgtaagtaggc ... acttctgtagCATATCCCGAAGATAAATGGAGAGATACCGAGCCCGGACGCTGCCACACTC
EST: TCGATGGAGGAGAAGTTGGCCGGCGGCTCACACACATGGAATCCATACCT CATATCCCGAAGATAAATGGAGAGATACCGAGCCCGGACGCTGCCACACTC
genomic: TCGATGGAGGAGAAGTTGGCCGGCGGCTCACACACATGGAATCCATACCTgtaagtaggc ... acttctgtagCATATCCCGAAGATAAATGGAGAGATACCGAGCCCGGACGCTGCCACACTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGAGAACGATGAGGCGATTGCGGTTATTCTTTCCGAGGAGTTGGCACAACTCGATGGAGGAGAAGTTGGCCGGCGGCTCACACACATGGAATCCATACCTgtaagtaggctgtatggatttttttcttctctccatggctgacttcttctttcttctccatagctgacttctttttggtgcacttctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA