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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaagacgttttgtgcaattctcactgtcggtactgaaaccaaacttttcag

Basic information

species Selaginella moellendorffii
transcript EFJ29918
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os03g51020.1 (Oryza sativa), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaa----gacgttttgtg------caa----ttctcactgtcg----gtactgaaaccaaacttttcag------------------------------
 || |||||||| || |||||||| ||||||||| ||||||| || || || || |||||||||||| || ||||  | || |||||||||||| |||||||||    ||  |||||||      |||    |||| | ||||     || |  | |  || |||||                                 
CCAGAGCCTTGATGAAATCAAGCTCCTGAAGTATGTCAACAAGCATGACCCTGCTGACAAGTACCATCTTTTACGTCTGTACGATTACTTCTATTATCGGgtaaatatgatattttgtgctccttcaaacctttcttattgtcatttagttcccatataaagcttttagtttatcacaagacatatttataaatatacaa

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G181002_T01 (Zea mays), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaag-----------acgttttgtg---caattctcactgtcggt-actgaaaccaaacttttcag---------------------------------
 || |||||||| ||||||||||| ||||||||| | ||||| || ||||| |  |||||||||||  || | ||  | ||||||||||||||  ||||||||||           ||  ||  |    || || ||| |||   | | |    |  |||| || |                                  
CCAGAGCCTTGATGAGATCAAGCTTCTGAAGTATGTTAACAAGCATGATCCTGGTGACAAGTACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaagtttgagcttttactcttgatagatcatttttcagtgttatttaattttgctcaactgttgaatttgtcacaactccactgcttgctggcatgtgt

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G015073_T01 (Zea mays), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaagacgttttgtgcaattctcactg-tcggtactgaaaccaaacttttcag---------------------------------------------------
|||||| ||||| ||||||||||| ||||||||| | ||||| || ||||| || ||||| |||||  || | ||  | ||||||||||||||  |||||||||     |||| ||  ||   | || | | | ||    |     | || |                                                    
TCAAAGTCTTGATGAGATCAAGCTTCTGAAGTATGTTAACAAGCATGATCCAGCTGACAAATACCACCTTTTGCGTCTGTATGATTACTTCTACTATCGGgtaaa----tttgagcttttactattggtagatcctttttcagtgttatttaatttcgattaagtgttgaatttatcacaacttcactgcttgctgacatgtgt

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA05G33560.1 (Glycine max), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaagacgttttgtgcaattctcactgtcggtactgaaac-caaact--tttcag------------------------------------------------
 ||||| ||||||||||||||||| || |||||| |||| || || ||||| || |||||||| || ||||| || ||||||||||| |||||| |||| |||||  | ||   || |||    || |   ||||   |  |||  |  |||||                                                 
CCAAAGTCTTGACGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATATGATTATTTCTATTATCGAgtaagtggatt---gccattgatcctcttaatacttttatacaagttgctttcaaaacaatcaattttcattttgggcacatatacatttttcctatatctta

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA08G06160.1 (Glycine max), 5'ss of exon 5
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaagacgttttgtgcaattctcactgtcggtactgaaaccaaac-ttttcag--------------------------------------------------
 ||||| ||||||||||||||||| || |||||| |||| || || ||||| || |||||||| || ||||| || ||||| ||||| |||||| |||| |||||  | ||   || |||    || |   ||||   || ||    |||||                                                   
CCAAAGTCTTGACGAGATCAAGCTTCTCAAGTATGTCAATAAGCATGATCCTGCAGACAAGTATCACATTCTTCGATTATACGATTATTTCTATTATCGAgtaagtggatt---gctattgatcctcttaatactattacaaattgctttcaaaacaatcaatattcattttaggcacatatacatttttcctatgtcttata

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA09G29970.1 (Glycine max), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaagacgttttgtgcaattc-tcactgtcggtactgaaaccaaacttttcag-----------------------------------------------
 ||||||||||| ||||||||||| || |||||| |||| || || |||||  | |||||||||||  ||||| | || ||||||||||||||| || | |||||    ||||     |   |   | |   || ||  | || | |||||                                                 
CCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTCTATTATAGAgtaagtgaatttggatgttctattgttctacttattgctatcataattttctttcaatcaatagttgatttaggcatatttgtatattaagagtctacaa

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA16G34510.1 (Glycine max), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaagacgttttgtgcaattc-tcactgtcggtactgaaaccaaacttttcag-----------------------------------------------
 ||||||||||| ||||||||||| || |||||| |||| || || |||||  | |||||||||||  ||||| | || ||||||||||| ||| || | |||||    |||      |   |   | |   || |   | || | |||||                                                 
CCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTTTATTATAGAgtaagtgaatttagatgttctattgttctacttattactatcatatttttctttcaatcaatagttgatttaggcatatttgtatattaagagtctacaa

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: AT1G73450.1 (Arabidopsis thaliana), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaagacgtt-------ttgtgcaattctcactgtcggtactg-aaaccaaacttttcag----------------------------------------------------------------------------------------------------------------------------
 || || ||||||||||| || ||  |||||||| ||||||| || ||||| || ||||| |||||| |||||||||| ||||||||||| ||  | ||||||||   ||       || |||||   |   | | | ||||| | | ||||  |  |                                                                                                                              
CCAGAGTCTTGACGAGATAAAACTTTTGAAGTATGTCAACAAGCATGATCCTGCTGACAAATACCATCTTCTACGGTTGTATGATTACTTTTACTACCGGgtaagtgattacatcccttttgcaaaatttggttttgctactgtatatcaaaagtgaccaattgtgtctttctcttcaacaattttagcacaagtgtgaaccatatgccttttatttaatacctttgcaatatttctctttgtggattgtttggtgtaacggattccctgaatgttctttgcag

upper sequence: EFJ29918 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: AT1G73460.1 (Arabidopsis thaliana), 5'ss of exon 3
TCAAAGCCTTGACGAGATCAAGCTGCTGAAGTATATCAACAAACACGATCCGGCGGACAAGTACCATATTCTACGGTTATATGATTACTTCTATCATCGGgtaag-------acgttttgtgcaattctcactgtcggtactg-aaaccaaacttttcag----------------------------------------
 || || ||||||||||| || ||  |||||||| ||||||| || ||||| || ||||| |||||| |||||||||| ||||||||||| ||  | || |||||       |    || |||||   |   | | | ||  | | | |||      ||                                         
CCAGAGTCTTGACGAGATAAAACTTTTGAAGTATGTCAACAAGCATGATCCTGCTGACAAATACCATCTTCTACGGTTGTATGATTACTTTTACTACCGCgtaagtgatcacatcccttttgcaaaatttggttttgctatagtatatcaataggggcaaattgtgtaactttatatagggaaaccacttaatcaggaaa