1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AACTTGCTTAAAGAATGGTTTGCCGACGAGAAGATCTCTGGTTGGTTCTTTTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAGgttcgtcttttcctttttacttctttactggcctagtgttttctgacaatggattgcag
species | Selaginella moellendorffii |
transcript | EFJ28764 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAG AAACTGGATGGTTTCCTAGCGCTGCTGAGTGTATCGGGCGGTAGCTGGTCTEST: gi|169036812|gb|FE443824.1|FE443824
genomic: TTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAGgttcgtcttt ... tggattgcagAAACTGGATGGTTTCCTAGCGCTGCTGAGTGTATCGGGCGGTAGCTGGTCT
EST: TTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAG AAACTGGATGGTTTCCTAGCGCTGCTGAGTGTATCGGGCGGTAGCTGGTCTEST: gi|169039083|gb|FE447757.1|FE447757
genomic: TTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAGgttcgtcttt ... tggattgcagAAACTGGATGGTTTCCTAGCGCTGCTGAGTGTATCGGGCGGTAGCTGGTCT
EST: TTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAG AAACTGGATGGTTTCCTAGCGCTGCTGAGTGTATCGGGCGGTAGCTGGTCT
genomic: TTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAGgttcgtcttt ... tggattgcagAAACTGGATGGTTTCCTAGCGCTGCTGAGTGTATCGGGCGGTAGCTGGTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AACTTGCTTAAAGAATGGTTTGCCGACGAGAAGATCTCTGGTTGGTTCTTTTGAGGAGTCTTTGCTGTCTGGACGTTTTCTAGCTGGAAAGTCTTGTCAGgttcgtcttttcctttttacttctttactggcctagtgttttctgacaatggattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA