1 5' 3' | 2 5' 3' |
ATCCAAGACGAATTGGATCATGCACGAGTACCGCCTCGCCGATAGCAGCGCCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaatctccgccatcgcctcggtcatggcttctttcttgcattctttgtggtgaaatcctcgatttcctggtgaaattcgcgtttcttgcttga...
species | Selaginella moellendorffii |
transcript | EFJ28600 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGG CTCGACGACTGGGTACTGTGCCGGATTTACAAGAAGAGCAGTGGAGCATTCEST: gi|169024416|gb|FE436226.1|FE436226
genomic: CCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaa ... ttttttccagCTCGACGACTGGGTACTGTGCCGGATTTACAAGAAGAGCAGTGGAGCATTC
EST: CCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGG CTCGACGACTGGGTACTGTGCCGGATTTACAAGAAGAGCAGTGGAGCATTCEST: gi|169076128|gb|FE484430.1|FE484430
genomic: CCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaa ... ttttttccagCTCGACGACTGGGTACTGTGCCGGATTTACAAGAAGAGCAGTGGAGCATTC
EST: CCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGG CTCGACGACTGGGTACTGTGCCGGATTTACAAGAAGAGCAGTGGAGCATTC
genomic: CCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaa ... ttttttccagCTCGACGACTGGGTACTGTGCCGGATTTACAAGAAGAGCAGTGGAGCATTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCAAGACGAATTGGATCATGCACGAGTACCGCCTCGCCGATAGCAGCGCCAAGGCCGCCGCAGCGATTCCGGCCATGCGCAAGAAAGGATCGCTCAGGgtaagaagaatctccgccatcgcctcggtcatggcttctttcttgcattctttgtggtgaaatcctcgatttcctggtgaaattcgcgtttcttgcttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgcctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcttgct