1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGGTTAGGGCTTTAGCCGTCGGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactgctcgatcagctcaggcgctcgcatttctctcgcggctgatcgcattccttcctctctctccag
species | Selaginella moellendorffii |
transcript | EFJ27946 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169058518|gb|FE464244.1|FE464244
genomic: GAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GGTTTGGAAGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169070557|gb|FE479834.1|FE479834
genomic: GGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169063696|gb|FE471802.1|FE471802
genomic: GAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: CTGGTTTGGAAGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169101168|gb|FE501925.1|FE501925
genomic: CTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: AGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169101169|gb|FE501926.1|FE501926
genomic: AGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169073901|gb|FE482991.1|FE482991
genomic: GGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GCCGTCGGCTGGTTTGGAAGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169021073|gb|FE430682.1|FE430682
genomic: GCCGTCGGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GGAGGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169038351|gb|FE443985.1|FE443985
genomic: GGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GTTTGGAAGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169058895|gb|FE468729.1|FE468729
genomic: GTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: TGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169021074|gb|FE430683.1|FE430683
genomic: TGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GGAGGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|70670086|gb|DN838663.1|DN838663
genomic: GGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: CTTTAGCCGTCGGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169047289|gb|FE456538.1|FE456538
genomic: CTTTAGCCGTCGGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169073900|gb|FE482990.1|FE482990
genomic: GAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GCCGTCGGCT-GTTTGAAAGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169058517|gb|FE464243.1|FE464243
genomic: GCCGTCGGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: CTGGTTTGGAAGAGGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGAEST: gi|169070556|gb|FE479833.1|FE479833
genomic: CTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
EST: GGAGCTGCGCCTTCGCGCCGATGG GTGCCTACAAATACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
genomic: GGAGCTGCGCCTTCGCGCCGATGGgtaagcactg ... ctctctccagGTGCCTACAAGTACATCGAGGAGCTATGGCGGAAGAAGCAATCCGATGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGGTTAGGGCTTTAGCCGTCGGCTGGTTTGGAGGAGGAGCTGCGCCTTCGCGCCGATGGgtaagcactgctcgatcagctcaggcgctcgcatttctctcgcggctgatcgcattccttcctctctctccag
- - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - AGCTGC