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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGGAGGAATGGATACGGTGCTAAGCTCGCGAACATTTTCTCAACCGAGTTTGTGATTGAAACCGCGGATGGCAAGCGGGGTAAAAAGTACAAGCAGgtaggcatcatcttcttagcagagctttatataaccttgcttatcgtttcgatttgatcag

Basic information

species Selaginella moellendorffii
transcript EFJ26127
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ26127 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv13s0064g00560.t01 (Vitis vinifera), 5'ss of exon 1
TGGTGGGAGGAATGGATACGGTGCTAAGCTCGCGAACATTTTCTCAACCGAGTTTGTGATTGAAACCGCGGATGGCAAGCGGGGTAAAAAGTACAAGCAGgtaggcatcatcttcttagcagagctttatataaccttgcttatcgtttcgattt--gatcag---------------------------------------
 |||||||||||||| ||||| || |||||| |||| ||||| ||||| ||||||||||| || ||||| ||||| | |||    || ||||| |||||||||   |  |   | |  ||  ||  |||      |||  || || ||| | | |   || ||                                       
CGGTGGGAGGAATGGGTACGGGGCGAAGCTCACGAATATTTTTTCAACGGAGTTTGTGATCGAGACCGCAGATGGGAGGCGCCAGAAGAAGTATAAGCAGgtataaa--agtatttgggcttaggattagggtttctttattttcttttggttcttgaatgaggagttcttttttcgggttttacatttttgaactgtaatt