Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   
4  
 5'  3'   
5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAACGAGGACGAGTTTCACAAAATCAGCCTCCACGAGTGTGATTTCTTCATTCGAAAGGTACCCGATCCTGACGACAACGTATATGATTTCAGAGAAgtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatctttcag

Basic information

species Selaginella moellendorffii
transcript EFJ25581
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25581 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
GATCAACGAGGACGAGTTTCACAAAATCAGCCTCCACGAGTGTGATTTCTTCATTCGAAAGGTACCCGATCCTGACGACAACGTATATGATTTCAGAGAAgtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatctttcag-------------------------------------------------
||||||||||||||||||||||||||| ||| | || || |||||||||||| | ||| || ||||| || || | || || || |||||||| || ||||| ||| | ||| | | || | |||| | || |
GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagttttt--ctgattttctc-gtttttttagatgagaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag