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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCAACGAGGACGAGTTTCACAAAATCAGCCTCCACGAGTGTGATTTCTTCATTCGAAAGGTACCCGATCCTGACGACAACGTATATGATTTCAGAGAAgtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatctttcag

Basic information

species Selaginella moellendorffii
transcript EFJ25581
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ25581 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv18s0001g01770.t01 (Vitis vinifera), 5'ss of exon 1
GATCAACGAGGACGAGTTTCACAAAATCAGCCTCCACGAGTGTGATTTCTTCATTCGAAAGGTACCCGATCCTGACGACAACGTATATGATTTCAGAGAAgtaagtttaaagctggtgttcgctgccttcgtttggctgaatggatctttcag-------------------------------------------------
||||||||||||||||||||||||||| ||| |    || || |||||||||||| | |||   || ||||| ||  || | || || || |||||||| || |||||    ||| | ||| | |  ||  |      |||| |  || |                                                    
GATCAACGAGGACGAGTTTCACAAAATTAGCTTGTTTGATTGCGATTTCTTCATTAGGAAGCCGCCTGATCCGGATAACGATGTCTACGACTTCAGAGAGgttagttttt--ctgattttctc-gtttttttagatgagaattgtgctattgatgaaagggaatattttggggtttctttgttttttattttttggttgtag