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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ24973
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os05g38820.5 (Oryza sativa), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagt-attgctggaagttctttcgatcctttgtggtgatactatcttct---tctactttgcag--------------------------------------------------------------------------------------
| |||||||||||  | ||||| || |  |||||||||||||| ||||||||||| ||||| || |||||||| |||||||||  ||||||||| ||||||| |||  | ||            |  || | ||   || |    ||| ||   ||| ||||  ||                                                                                      
TCATGAAGAAGGCCATCCCGGCCAACGGGAAGATCGCCAAGGACGCCAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACCAGCGAgtgagtcgtcgccctcgtcctcccccctcttgtgctctgctctgctctgctctgtcttcttttgagttttgagctttgagctcgttgtttgacttgtcgttggcggcgatgagatgtgactgggtttttgttgtggtggggcaacattacag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os05g49780.1 (Oryza sativa), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgc-tggaagttctttcgatcctttgtggtgatact--atcttcttctactt--tgcag-----------------------------------------------------------------------------------------
| |||     |||  |||||| ||| |  ||||||||||||||  |||||||| | || || || |||||||| |||||||||||||||||||| ||||||| ||| | || | |   || | |      | | |   | | |   | |||  |  |     | |||                                                                                         
TCATGCGCCGGGCCGTGCCGGAGAACGGCAAGATCGCCAAGGACTCCAAGGAGTCCGTCCAGGAGTGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAgtcagtgtcgcctcgcctttgtatttgctgtatatatcggtgccggagcttgcttgatccgatccagttcggagcggcggcggcgcattttgtcgtgcacctgccgtgcagatggcaagggtgactgacggccatctttggcatctttccctgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os01g61810.3 (Oryza sativa), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag-----------------------------------------------------------
| |||||||||||  | |||||||| |  |||||||||||||| |||||||||||  |||| || |||||||| |||||||||  |||| |||| ||||||| ||| |    ||      |  ||      ||   |      | |||||| |    ||                                                              
TCATGAAGAAGGCCGTCCCGGCGAACGGCAAGATCGCCAAGGACGCCAAGGAGACCCTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCGTCACCAGCGAgtgagtctgcgcgggctcggtaccgtgatcctgccctccccacaccttcttttgtgatggttggtttagggtgtgattttgctttgctttgtggtttgggcggtggtgcgggatgggacag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM5G804893_T01 (Zea mays), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtat------tgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag--------------------------------------------------------------------
| |||||||||||  | ||||| || |  |||||||||||||| || |||||||| ||||| || |||||||| |||||||||  |||||||||||||||||||||        ||| |     |||| |  |   |||   || |   |  ||    |    | |||                                                                    
TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACTAGCGAgtaagtgcctcagctgcggctgactcttacttttgcttggcttgttgggaatttggagtggcgttcagggctttagcttggctggggttttgtgttgacttgtccatgtccacgtttttttgtccgctctttgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G064426_T02 (Zea mays), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagt--attgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag------------------------------------------------------------------------------------
| |||||||||||  | ||||| || |  |||||||||||||| || |||||||| ||||| || |||||||| |||||||||  |||||||||||||||||||||   | |   |  | |   ||   |  || || |         |  |   | ||   ||                                                                                    
TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccctcggccgcggctgactctgactcttctgtttgcttggcatgttgggaattcagagtggcgtttcgcaaaccgcactttagcttaggtggggttttgtgttgacttgtctacgtccacgttccttgtctgctgtttgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G478501_T01 (Zea mays), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag----------------------------------------------------------
| |||      ||| |||||| ||| | ||||||||| | ||| |||| |||| |  | || || |||||||| |||||||||||||||||||| |||||||||      ||     | | ||   ||||     |   | | ||  |||   ||||||  |                                                          
TCATGCGCCGCGCGGTGCCGGAGAACGGAAAGATCGCTAGGGACGCCAGGGAGTCCATCCAGGAGTGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAgtaaagtcccct-----tcccttatctcctcgtccgccttccaattgtctcaaactttgatgctcccaccccttggcctcgcatgccgactcgctgtccattgatttttcgtctctgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G480621_T01 (Zea mays), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcc--tttgtggtgatactatcttcttctactttgcag--------------------------------------------
| |||      ||| || ||| ||| | ||||||||| | |||||||| |||| |  | || || || ||||| |||||||||||||||||||| |||||||||||     |      |||     |||   ||    |  |   |   |||  | ||   ||                                             
TCATGCGCCGCGCGGTGACGGAGAACGGAAAGATCGCTAGGGATGCCAGGGAGTCCATCCAGGAGTGTGTCTCCGAGTTCATCAGCTTCATCACCAGCGAgtaagtccccttcccttctctcctcgtccggcttccaattgtctcaaactctgatgctcc-caccccttggcctcgcatgccgactcgctgtccattcatctctgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G303465_T04 (Zea mays), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagt--attgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag---------------------------------------------------------------
| |||||||||||  | ||||| || |  |||||||||||||| || ||||||||  |||| || |||||||| ||||||||    ||| | || |||||||||||  |  | ||| |   | |   |  |  |   ||        |||  |||    |   |                                                               
TCATGAAGAAGGCCGTCCCGGCCAACGGCAAGATCGCCAAGGACGCTAAGGAGACCCTGCAGGAGTGCGTCTCCGAGTTCATATCATTCGTGACCAGCGAgtaagttgacagttggcaccgcctggtagacggtagcgtagcgtagccttggtcttggatcgggttggtttttctttgttttaatgtaggataggttctgatgtaagttcacgggtgctggttgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA10G05610.1 (Glycine max), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtat---tgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag------------------------
| |||||||| ||||| ||  | || |  || ||||||||||| |||||||| || ||||| ||||||||||| ||||||||||||||| |||| ||||||||    |   || |     | |   |  || ||| | ||  |  |||   | |  | |                              
TCATGAAGAAAGCGCTTCCTCCCAACGGGAAAATCGCCAAGGACGCCAAGGAAACCGTGCAGGAATGCGTCTCCGAGTTCATCAGCTTCGTCACCAGCGAgtacacttctttgtttctcatgcgcgctttcattttttgtt-tgttattcgcgttaattgaatgaataaattgcgttgttgtttaacag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA03G33490.1 (Glycine max), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttcta-ctttgcag--------------------------------
| ||||||||||| || || || || |  || ||||| ||||| ||||| ||||| || || ||||||||||| |||||||||||||||||||| ||||||| ||| |   |     |||||  ||| ||||          | |  |  | || | | ||                                  
TCATGAAGAAGGCACTTCCTGCCAACGGTAAAATCGCAAAGGACGCCAAAGAGACCGTTCAGGAATGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAgttagtgtgttttttttttcttctgattcttttctcctccgtttttcttatttatcatcgcctgcttttaatttaaaattccttgaattctgtag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA13G10690.1 (Glycine max), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag-----------------------------
| ||||||||   ||| ||  | ||    || ||||||||||| |||||||| ||  |||||||||||||||| ||||||||||||||| | ||  |||||||   | | ||  |  ||||  ||  |  ||    |  |  | | || |||   ||    |                             
TCATGAAGAAAATGCTTCCTTCCAACAGGAAAATCGCCAAGGACGCCAAGGAAACTTTGCAAGAATGCGTCTCTGAGTTCATCAGCTTCGTTACCTGCGAgta--cacttctt-agtttctcacgcacgctttcattttttgtttgttattcgcgttaattgaatgaataaattgcgttgttgtttaatag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA19G36220.1 (Glycine max), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag-----------------------------------------
| ||||||||||| || || ||||| |  || ||||||||||| ||||| ||||| || || |||||||| || ||||||||||| |||||||| ||||||| ||| |   |     ||||||   |  |   |  |  |  |   || ||   |||   |                                          
TCATGAAGAAGGCACTACCTGCGAACGGTAAAATCGCCAAGGACGCCAAAGAGACCGTTCAGGAATGCGTATCCGAGTTCATCAGTTTCATCACCAGCGAgttagtgtctttttcttttctttttcttatgattcattctcttccgttttttctcttattatatcatcccgtgctttaatttcgaatccgtttaatcgtgtag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA11G29860.1 (Glycine max), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaag------tattgctgg-aagttctttcgatcctttgtggtgatactatcttcttctactttgcag--------------------
| |||||||| ||||| ||  | ||||  || ||||||||||| |||||||| || ||||| ||||||||||  ||||||||||||||  |||| ||||||||        | || || |   || |||||  |  ||  | || || |    ||  |  | |    |                     
TCATGAAGAAAGCGCTTCCTCCCAATGGGAAAATCGCCAAGGACGCCAAGGAAACTGTGCAGGAATGCGTCTTCGAGTTCATCAGCTTTGTCACCAGCGAgtacacttctttgtttctcgcgtgtgctttcattttttgtttgttattc-gcgttaattgaatgaataaattgcattgttgtttaacag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA20G34050.1 (Glycine max), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaag--------------tattgctggaagttctttcgatcctttgtgg-tgatactatcttcttctactttgcag-------------------------------------------------------------------------------------------------
| ||||||||||| |||||  | || |  ||||| || ||||||||||| || ||  |||| |||||||| || ||||||||||||||||| || ||||||| ||              |||   |   |  | ||| | |  | | | | | | | | |||| || |  ||    |                                                                                                 
TTATGAAGAAGGCTCTGCCTCCCAACGGCAAGATTGCAAAGGATGCCAAAGACACCATGCAGGAATGCGTTTCTGAGTTCATCAGCTTCATTACCAGCGAgtcagttagcaactatacatatccatatcaaatgttttgtttttatttagctcaaaatgtctttttttttttaatggatgattgcagttttttatttttattttttggggattgagggtttctgagaatttgtttatttctgaattccacccacgtgtttatttcggcgtgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA10G33550.2 (Glycine max), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagt--attgctggaagttctttcgatcctttgtggtgatactatct-tcttctactttgcag---------------------------------------------------------------------------------------------------------------------
| ||||||||||| |||||  | ||||  ||||| || |||||||| || || ||  ||||||||||||| || || |||||||||||||| || ||||||| |||   ||  | | |  | |    ||||  | |   ||||  |  | | || |  |||  ||                                                                                                                     
TCATGAAGAAGGCTCTGCCTCCCAATGGCAAGATTGCGAAGGATGCAAAAGACACAATGCAAGAATGCGTTTCTGAATTCATCAGCTTCATTACCAGCGAgtgagtcagttattagcaactatacatatccagt-tatcgatatcaaatgttttttgttttttagctcaaaatgttttttaatgtaaagctgcagttttttaatttttattttttggggattgggggttctgagaattttttaattactgaattccacgcacgtggttattatgacttgcag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: AT2G38880.7 (Arabidopsis thaliana), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctt---tcgatcctttgtggtg-atactatcttcttctactttgcag----------------------------------
| |||||||| ||| ||||  | ||||  ||||| |  || ||||| ||||| || || || ||||||||||| ||||||||||||||||||||||||||||| | ||| |      |||||   || |||   | || || | | ||| ||  |||    || |                                   
TCATGAAGAAAGCGTTGCCTCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCATCACTAGCGAgtatgcattcccaatttttcttctttcaatcgaatttgttggaaaatattttgctctttggtgaaaaaaattgatcatttgttggaactttgggtttgtg

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv08s0040g03260.t01 (Vitis vinifera), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaag--tattgctggaagttctttcgatcctttgtggtg--------atactatcttc--ttctactttgcag------------
| |||||||||||||| || ||||||| ||||||||| |||||||| || ||||   |||||||||||||||| ||||||||||| ||||||||||||||||| |  |  |||      |  |||  ||  |  | ||||        ||  | |  |   || |  ||| ||             
TCATGAAGAAGGCGCTTCCCGCGAATGGAAAGATCGCTAAGGATGCGAAAGAGATCATGCAAGAATGCGTCTCGGAGTTCATCAGTTTCATCACTAGCGAgtatggctgatgcattttttctttttaattttaggcggtgcgtgattgatggtgttgttggttttgtttttcaattggatgcctag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv13s0019g03600.t01 (Vitis vinifera), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgt--------ggtgatactatcttcttctactttgcag------------------------------
| |||||||||||| ||||||| ||||  ||||||||||||||||| ||||| || || ||||| |||||||| ||||||||||| |||||||| |||||||| |     ||     |  ||||  | | || |        | ||||  | | ||    || ||                                   
TCATGAAGAAGGCGTTGCCGGCTAATGGTAAGATCGCCAAGGATGCGAAGGACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAgtacgcggatctctctctcttttcttttccttctatttctccgatgattgtgttttgggttatttgattaaaaggatgaaatcttttccttctatttctc

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv06s0004g03490.t01 (Vitis vinifera), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag-------------------------------------------
| ||||||||||| || ||||| || |  ||||||||||||||||| ||||||||  | ||||||||||| || ||||||||||| |||||||| ||||||||     ||  ||   |  |||  ||  |  |||  |  | |    ||   |   | || |                                           
TCATGAAGAAGGCTCTTCCGGCCAACGGCAAGATCGCCAAGGATGCGAAGGAGACTCTCCAAGAATGCGTTTCCGAGTTCATCAGTTTCATCACCAGCGAgta-----tgagggttttgtttttaattgtcggtgccgtaatttggctccgtttggtcgctgagaaaattttggaaaagttaagaggaattaaaactttgaattt

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag---------------------------------------------------------------------------------------------------
| |||||||||||||| |||   || || || || ||||||||||| ||||||||||| || || |||||||| |||||||| |||||||||||    |||||||| |  ||||  |  |   || |  || | |      |   |  | ||  |   || |                                                                                                   
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgt--ctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S25_10V6.1 (Physcomitrella patens), 5'ss of exon 1
----TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctgg--------aagttctttcgat-cctttgtggtgat---actatcttcttct--actttgcag--------------------
    | |||||||||||| |||| || ||||| ||||| ||||| ||||| |||||||| || || || || || ||||| |||||||| |||||||||||||||||    ||  |          || |  ||  ||    ||||    |||    ||  | || |||   || |||                      
CGCATCATGAAGAAGGCGTTGCCTGCTAATGCTAAGATTGCCAAAGATGCGAAGGAGACTGTTCAGGAGTGTGTTTCAGAATTCATCAGTTTCATCACTAgcgagtatccgtttttcacaacgtctaaataattctgacatttttgcatagatcccgctgccctcatcttacctctgctaatcttgtagttgatccatgc

upper sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S25_89V6.1 (Physcomitrella patens), 5'ss of exon 2
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtg-atactatc-ttcttctactttgcag-------------------------------------
| |||||||||||| |||| || ||||| ||||| ||||| ||||| |||||||| || ||||| || || || || |||||||| |||||||| ||||||||   |||     | | | ||||| |    | ||  | ||  |  | || |  |||| |                                         
TCATGAAGAAGGCGTTGCCTGCTAATGCCAAGATTGCCAAAGATGCGAAGGAGACAGTTCAAGAGTGTGTTTCCGAATTCATCAGTTTCATCACGAGCGAgtatccatt-tgatatggtttttcggtgtcatatgtcgcatgttgcccttgtcttactgtttctttacgtccgctaatgtggccgttggaccgtaataacg

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT