Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTCTCATGGGGAAGAACACTCTCATGAAGCGGACGATCAGGACTTACGCCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaattttttttcttgagagaaagcttgcgatggttgctcttggcag

Basic information

species Selaginella moellendorffii
transcript EFJ24514
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169059624|gb|FE468858.1|FE468858
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATTTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169102451|gb|FE503893.1|FE503893
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATTTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169078881|gb|FE489653.1|FE489653
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169060805|gb|FE469220.1|FE469220
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169040256|gb|FE448971.1|FE448971
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169114856|gb|FE516117.1|FE516117
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169103625|gb|FE506822.1|FE506822
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATTTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169109253|gb|FE512820.1|FE512820
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169045016|gb|FE452758.1|FE452758
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169114855|gb|FE516116.1|FE516116
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169078880|gb|FE489652.1|FE489652
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169053546|gb|FE463315.1|FE463315
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169053686|gb|FE461505.1|FE461505
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169035320|gb|FE443764.1|FE443764
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATTTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
EST: gi|169074146|gb|FE481871.1|FE481871
EST:     CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTG                         GGAAATGTGGGACTTATTTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG
genomic: CCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 35 (downstream exon)
Score: 67

GGTTCTCATGGGGAAGAACACTCTCATGAAGCGGACGATCAGGACTTACGCCGAGAAGAGCGGCAACACGACTGTTCTCAGTCTCATGCCTCTTTTGGTGgtaaggagaa ... ctcttggcagGGAAATGTGGGACTTATCTTCACCAAAGGTGATCTCAAAGAAGTTCGCGAGGAAGTCGCGAAGTACAAG




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