1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AATTTTGTCTAGAGTATTCAAACAGTCGACGGCTATGGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAGgtactctaacgggatcgcggccacaaaaatttcagctctcatggatcaatttccccccag
species | Selaginella moellendorffii |
transcript | EFJ24149 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGACGGCTATGGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAG GTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACGEST: gi|169064038|gb|FE472225.1|FE472225
genomic: CGACGGCTATGGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAGgtactctaac ... ttccccccagGTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACG
EST: GGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAG GTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACGEST: gi|169052709|gb|FE463531.1|FE463531
genomic: GGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAGgtactctaac ... ttccccccagGTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACG
EST: GGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAG GTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACGEST: gi|169060887|gb|FE469282.1|FE469282
genomic: GGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAGgtactctaac ... ttccccccagGTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACG
EST: CTATGGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAG GTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACGEST: gi|169100364|gb|FE501161.1|FE501161
genomic: CTATGGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAGgtactctaac ... ttccccccagGTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACG
EST: GGCGCACGAAGCTGGGCTCGCAGGGGCTAGAG GTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACG
genomic: GGCGCACGAAGCTGGGCTCGCAGGGGCTAGAGgtactctaac ... ttccccccagGTGTCGGCTCTAGGTCTGGGATGCATGGGCCTCTCCACCTTCTATGGCACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTTGTCTAGAGTATTCAAACAGTCGACGGCTATGGAGTGGAGGCGCACGAAGCTGGGCTCGCAGGGGCTAGAGgtactctaacgggatcgcggccacaaaaatttcagctctcatggatcaatttccccccag
- - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG