1 5' 3' | 2 5' 3' | 3 5' 3' |
CCAGAAATTAGGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAGgtaaatgcccgaattcgctgtaagctcgattcgattttgcgattggcag
species | Selaginella moellendorffii |
transcript | EFJ23797 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAG CTCACGATCTGGCGGCGGACATGGTGAAGCAAATGGCGAACGAGCCTTCCGEST: gi|169029539|gb|FE438913.1|FE438913
genomic: GGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAGgtaaatgccc ... cgattggcagCTCACGATCTGGCGGCGGACATGGTGAAGCAAATGGCGAACGAGCCTTCCG
EST: AGGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAG CTCACGATCTGGCGGCGGACATGGTGAAGCAAATGGCGAACGAGCCTTCCGEST: gi|169082850|gb|FE486786.1|FE486786
genomic: AGGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAGgtaaatgccc ... cgattggcagCTCACGATCTGGCGGCGGACATGGTGAAGCAAATGGCGAACGAGCCTTCCG
EST: AGGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAG CTCACGATCTGGCGGCGGACATGGTGAAGCAAATGGCGAACGAGCCTTCCG
genomic: AGGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAGgtaaatgccc ... cgattggcagCTCACGATCTGGCGGCGGACATGGTGAAGCAAATGGCGAACGAGCCTTCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGAAATTAGGGTTTTTGAGAGTCATGGACGCCAAGCTTGGGGAGGCGCTCCAGCAAGgtaaatgcccgaattcgctgtaagctcgattcgattttgcgattggcag
- - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG