1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCGAAGGATTCGAGGATGGCATGCAAACCGTACAGTGATTCCGATACTTTCAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcacgattctttgctcacttctactaaatttttctctccag
species | Selaginella moellendorffii |
transcript | EFJ22768 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169075667|gb|FE482053.1|FE482053
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169102389|gb|FE507081.1|FE507081
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169082428|gb|FE488990.1|FE488990
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169080759|gb|FE487228.1|FE487228
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: TGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169080941|gb|FE486110.1|FE486110
genomic: TGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169038899|gb|FE449616.1|FE449616
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169107251|gb|FE508250.1|FE508250
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169115683|gb|FE517269.1|FE517269
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169031592|gb|FE439057.1|FE439057
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169080526|gb|FE488464.1|FE488464
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169026483|gb|FE434770.1|FE434770
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169083004|gb|FE488526.1|FE488526
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169092914|gb|FE495208.1|FE495208
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: ATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTGEST: gi|169019881|gb|FE426968.1|FE426968
genomic: ATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
EST: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAG ATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
genomic: CAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcac ... ttctctccagATTGTTACTTCGCTTTGAAGGTTTGGAACGCACAAAACGCTGGAGCGGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAAGGATTCGAGGATGGCATGCAAACCGTACAGTGATTCCGATACTTTCAGGAGGAAATCCGGTGGGCTTCCCAACGTGGTGCTTGTCGATCGAGGAGgtgagctcacgattctttgctcacttctactaaatttttctctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG