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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTGCGTTTCGTTTGCTGAATGCCCTGCTCGTTCGCACGTACTTCAACCCGGACGAGCACTGGCAAGCACTCGAAGTTGCGCACCGCATTGTCTTCGGgtaagctcaaaaacaaatctctcggtcatacattcttgttttctttgtgatctag

Basic information

species Selaginella moellendorffii
transcript EFJ22080
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ22080 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os01g39810.1 (Oryza sativa), 5'ss of exon 1
GTATTGCGTTTCGTTTGCTGAATGCCCTGCTCGTTCGCACGTACTTCAACCCGGACGAGCACTGGCAAGCACTCGAAGTTGCGCACCGCATTGTCTTCGGgtaag-ctcaaaaacaaatctctcggt-catacattcttgttttctttgtgatctag---------------------------------------------------------------
   | || || ||   |  ||| || ||||| || ||||| ||||||||||| ||||||||||||||    ||||| || || |||||||| ||||||||||||  |||     |   |    ||||   ||  |||   |       |   || ||                                                               
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccctcttcgccggtgtttagcttcgaatccagcgggcactccagtccaagggagtgggatgcttaagctgctgcattttgtgagccttctctgttcgttcgttgcag

upper sequence: EFJ22080 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os02g02110.1 (Oryza sativa), 5'ss of exon 1
GTATTGCGTTTCGTTTGCTGAATGCCCTGCTCGTTCGCACGTACTTCAACCCGGACGAGCACTGGCAAGCACTCGAAGTTGCGCACCGCATTGTCTTCGGgtaag-ctcaaaaacaaatctctcg--gtcatacattcttgtt-ttctttgtgatctag-----------------------------------------------------------------------------------------------
   | || || ||   |  ||| || ||||| || ||||| ||||||||||| ||||||||||||||    ||||| || || |||||||| ||||||||||||  |||     |    |   ||  | |     |   |||| | |   |   | |||                                                                                               
CGCTGGCCTTCCGCGCGGCGAACGCGCTGCTGGTGCGCACCTACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCATCGTCTTCGGgtaaaactcgccgccgccgccgccgccgccgccgctggctgttgtgcgccggcttttagtctgcttgtaagtcgcttgaaatcgaaatagaatccagctgacactctcaaagggagtgggatacttgaactgccgcattttctgttcactgcag

upper sequence: EFJ22080 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G000937_T01 (Zea mays), 5'ss of exon 2
GTATTGCGTTTCGTTTGCTGAATGCCCTGCTCGTTCGCACGTACTTCAACCCGGACGAGCACTGGCAAGCACTCGAAGTTGCGCACCGCATTGTCTTCGGgtaagctcaaaaacaaat--ctctcggt-catacatt-cttgttttctttgtgatctag-----------------------------------------
   | ||||| ||   |   || || |||||||| ||||||||||||||||| || |||||||||||    ||||| || || |||||| | | |||||||||| |||     |   |  || | | | | | | |  || || ||  ||| | |                                             
CGCTGGCGTTCCGCGCGGCCAACGCGCTGCTCGTGCGCACGTACTTCAACCCTGATGAGCACTGGCAGTGTCTCGAGGTCGCCCACCGCGTCGCCTTCGGgtaacctcgccctcgccttgctgttgctgcctgcttcgctggtgttagttgcggtgcgccccgaattggatccggttgctgctcactagtcaccactgct

upper sequence: EFJ22080 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G164175_T02 (Zea mays), 5'ss of exon 3
GTATTGCGTTTCGTTTGCTGAATGCCCTGCTCGTTCGCACGTACTTCAACCCGGACGAGCACTGGCAAGCACTCGAAGTTGCGCACCGCATTGTCTTCGGgtaagctcaaaaacaaat--ctctcggt-catacatt-cttgttttctttgtgatctag-----------------------------------------
   | ||||| ||   |   || ||  ||||||| ||||| ||||||||||| ||||||||||||||    ||||| || || |||||| | |  ||||||||| |||     |   |  || | | | | | | |  || || ||  ||  | |                                             
CGCTGGCGTTCCGCGCGGCCAACGCGTTGCTCGTGCGCACATACTTCAACCCCGACGAGCACTGGCAGTGCCTCGAGGTCGCCCACCGCGTCGCGTTCGGgtaacctcgccctcgccttgctgttgctgcctgcttcgctggtgttagttacggtgcgccctgaattggatccggttgctcaccactgcttggctcgagg