1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGCCACCGCATCTTCTCCGGCCTCGAGGAAGCGGTGCTCAAGAATGTGGATGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACGgtgagtgaatcgagctctttgtttgcgcttgagtgtgagattcctggctcag
species | Selaginella moellendorffii |
transcript | EFJ21647 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACG GCATGAACAAGATGGTGATCAATCACCTGGACAAGCTGTTTGTGACGAATGEST: gi|169034976|gb|FE444837.1|FE444837
genomic: TGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACGgtgagtgaat ... cctggctcagGCATGAACAAGATGGTGATCAATCACCTGGACAAGCTGTTTGTGACGAATG
EST: TGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACG GCATGAACAAGATGGTGATCAATCACCTGGACAAGCTGTTTGTGACGAATGEST: gi|169034406|gb|FE446377.1|FE446377
genomic: TGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACGgtgagtgaat ... cctggctcagGCATGAACAAGATGGTGATCAATCACCTGGACAAGCTGTTTGTGACGAATG
EST: TGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACG GCATGAACAAGATGGTGATCAATCACCTGGACAAGCTGTTTGTGACGAATG
genomic: TGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACGgtgagtgaat ... cctggctcagGCATGAACAAGATGGTGATCAATCACCTGGACAAGCTGTTTGTGACGAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCCACCGCATCTTCTCCGGCCTCGAGGAAGCGGTGCTCAAGAATGTGGATGCCTGCAAGCAGCTGTCGCAGATCACTCGGACGTCCCTCGGCCCCAACGgtgagtgaatcgagctctttgtttgcgcttgagtgtgagattcctggctcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA