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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAATGGCAACAGCAAGAGCGCTAGCGTGCGAGTTGGAAGCTCGGGCAAGCCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggttcttcccaaagcttggattcgatcaaaagctttggtttttttttcttggattcgatcgaaagctttgtttttctttgtgttcctctag

Basic information

species Selaginella moellendorffii
transcript EFJ21541
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169086911|gb|FE495120.1|FE495120
EST:     CTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG                         TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: CTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: gi|169097972|gb|FE498769.1|FE498769
EST:     CCTCTCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG                         TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: gi|169041617|gb|FE449045.1|FE449045
EST:     CCTCTCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG                         TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: gi|169095390|gb|FE497496.1|FE497496
EST:     CCTCTCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG                         TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: gi|169018437|gb|FE427246.1|FE427246
EST:     TCCACACCACCCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG                         TGTGACTGTAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: TCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: gi|169069871|gb|FE477536.1|FE477536
EST:     CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAG                         TGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: CCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
EST: gi|169061633|gb|FE469420.1|FE469420
EST:     CCGGAGCTCCAGTCTCGGACGATAACAACAG                         TGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT
genomic: CCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggt ... gttcctctagTGTAACTATAGGACAGAGTGGACACCTTTTGTTTGAAGACGTCCATTTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAATGGCAACAGCAAGAGCGCTAGCGTGCGAGTTGGAAGCTCGGGCAAGCCTCTCCACACCACGCTCGCCGGAGCTCCAGTCTCGGACGATAACAACAGgtactgtggttcttcccaaagcttggattcgatcaaaagctttggtttttttttcttggattcgatcgaaagctttgtttttctttgtgttcctctag

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