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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGCCACGCAATGAGACCCCAATCAGTGAGAATGAGATCCGGATTACCACGCAGGGGAAAATGCGCAACTACATTACCTATGCGATTAGCCTGATACAGgtgaaaagaaggaagaatcgctggttttttcaaaattttttcccttgtcttttgagcattgcag

Basic information

species Selaginella moellendorffii
transcript EFJ21285
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ21285 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os09g37006.2 (Oryza sativa), 5'ss of exon 2
GAAGCCACGCAATGAGACCCCAATCAGTGAGAATGAGATCCGGATTACCACGCAGGGGAAAATGCGCAACTACATTACCTATGCGATTAGCCTGATACAGgtgaa-------aagaaggaagaatcgctggttttt---tcaaaattttttccc----ttgtcttttgagcattgcag----------------------
||||||  |  | ||| | || ||||  ||||| |||||||| || |||||||||||||  |||||||||||||| ||||| ||||  | | || | |||||  |         | ||   ||||   | |||||     || ||| ||||       | || |  |  |  |||  |                      
GAAGCCGAGGGAGGAGGCGCCCATCAAGGAGAACGAGATCCGCATCACCACGCAGGGGAGGATGCGCAACTACATCACCTACGCGACCACCTTGCTCCAGgtacacctacgcttgcagtttgaatttttcgttttagcgccagaatgtttttttgggttggtttggtagggcttgtggattggtcggtgataactgtttc

upper sequence: EFJ21285 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os11g06760.2 (Oryza sativa), 5'ss of exon 2
GAAGCCACGCAATGAGACCCCAATCAGTGAGAATGAGATCCGGATTACCACGCAGGGGAAAATGCGCAACTACATTACCTATGCGATTAGCCTGATACAGgtgaaaagaaggaagaatcgctggttttttcaaaattttttcccttgtcttttgagcattgcag-----------------------------------
|||||| ||||||||||| ||||| ||||||||||||||| |||| ||  | |||||||  ||| | ||||| || | ||||| |||     || |  ||||||    |    |  ||  ||  |  |||    || || |   |||   |  || ||| ||||                                   
GAAGCCTCGCAATGAGACACCAATTAGTGAGAATGAGATCAGGATCACTGCACAGGGGAGGATGAGGAACTATATCAGCTATGGGATGTCGTTGCTTGAGgtgaccctact--actattactt-tcctttggctatgttgttatttgaggta-gaacat-gcagcaaccttttttgtgccatgttttaacaattaacag

upper sequence: EFJ21285 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os11g06760.1 (Oryza sativa), 5'ss of exon 2
GAAGCCACGCAATGAGACCCCAATCAGTGAGAATGAGATCCGGATTACCACGCAGGGGAAAATGCGCAACTACATTACCTATGCGATTAGCCTGATACAGgtgaaaagaaggaagaatcgctggttttttcaaaattttttcccttgtcttttgagcattgcag-----------------------------------------
|||||| ||||||||||| ||||| ||||||||||||||| |||| ||  | |||||||  ||| | ||||| || | ||||| |||     || |  ||||||    |    |  ||  ||  |  |||    || || |   |||   |  || ||| ||||                                         
GAAGCCTCGCAATGAGACACCAATTAGTGAGAATGAGATCAGGATCACTGCACAGGGGAGGATGAGGAACTATATCAGCTATGGGATGTCGTTGCTTGAGgtgaccctact--actattactt-tcctttggctatgttgttatttgaggta-gaacat-gcagcaaccttttttgtgccatgttttaacaattaacaggacgcg

upper sequence: EFJ21285 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S10_152V6.1 (Physcomitrella patens), 5'ss of exon 2
GAAGCCACGCAATGAGACCCCAATCAGTGAGAATGAGATCCGGATTACCACGCAGGGGAAAATGCGCAACTACATTACCTATGCGATTAGCCTGATACAGgtgaaaagaaggaagaatcgctggttttttcaaaatttttt---cccttgtcttttgagcattgcag---------------------------------
|||||| ||    || |  || |||||||| ||||| ||||| ||||| ||||| || |||||||| ||||||||||||||||| |  |  ||  | ||||| |  |  |  |  | ||  |    ||||   |    |       | | |  ||||    |||                                    
GAAGCCGCGGCCCGAAATACCTATCAGTGAAAATGAAATCCGTATTACTACGCAAGGAAAAATGCGGAACTACATTACCTATGCAACCACTCTATTGCAGgtcatcatcactatcattccttaagattttagtagccctacgaatacattttctttggttcttgttaaactctcaatagatgatccaagcttcatattgt