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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgccttctttctgtatcagctgtgatacttatgttgcctgctacag

Basic information

species Selaginella moellendorffii
transcript EFJ20162
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os06g07210.1 (Oryza sativa), 5'ss of exon 13
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgccttctttctgta-tcagctgtgatacttat----gttgcctgctacag----------------------
|||||||||||||||| || || || || || || |||||||| ||||| || || ||||| ||||||||||| || || |||   || || |||||||||| ||        ||||  | ||   |  | || |     | ||| |   |  |                      
TTGTTGCTCCAATGCCTACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAATGCTTTGAACCTTATACATCTAACATATACAGCCGGCGGGTTCTAAGgtttgtaactacactgttcttagtgctcgtgctcactacaggtgcttatgattgattttgtttaattcttttccag

upper sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G340527_T01 (Zea mays), 5'ss of exon 13
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgc--cttctttctgta-tcagctgtgatacttatgttgcctgctacag------------------------------------
|||||||||||||||| || || || || || || |||||||| ||||| ||||| ||||| || || ||||| |||||||||  |||||| |||||||||| ||   |     ||| || |    |    |  |||  ||      ||||                                     
TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGCTTTGAACCCTACACATCTAATATTTACAGTCGACGGGTTCTAAGgtctgtaacaatactctttacttctttagagtgtttacattttgacttacatgtgcatatatgattgatctttctatttttattccag

upper sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G304362_T01 (Zea mays), 5'ss of exon 13
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgcc----ttctttctgtatcagctgtgatacttatgttgcctgctacag-------------------------------------
|||||||||||||||| || || || || || || |||||||| ||||| ||||||||||| || || || || ||||| |||  |||||| |||||||||| ||      | ||  ||   ||   |  | |  |||  |||     ||||                                      
TTGTTGCTCCAATGCCCACTGCTTCCACTAGTCAGATTCTTGGCAACAATGAGTGTTTTGAACCCTACACGTCTAATATATACAGTCGACGTGTTCTAAGgtctgtaacaatactccctacttct-ttagggtgtttacattgtgatgtacatgtgcacatgtgattaatctttctattttttgttccag

upper sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA05G32070.1 (Glycine max), 5'ss of exon 13
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgta---tgccttctttctgtatca-gctgtgatacttatgttgcctgctacag----------------------
||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| |||   ||  | ||||||||||    |||| | |     ||| | | | |||||  |   |   ||                             
TTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGCCGCAGAGTTCTAAGgtttattgccatatcatcttattatgttttgatatcttattgatctatcttgattgttaactgtttgtctttcag

upper sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA08G15360.1 (Glycine max), 5'ss of exon 15
--------TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgccttctttctgtatcagc----tgtgatacttatgttgcctgctacag-----------------------------------------------
        ||||||| || ||||| || |||||||| ||||| |||||||| || || |||||||||||||| ||||| || ||||| |||  |||  | ||| |||||        | | |  | | |      | |||||  |   |   ||  |                                                   
CTCACTTCTTGTTGCCCCTATGCCAACTGCATCAACTAGCCAGATTCTTGGCAATAATGAGTGTTTTGAGCCATATACTTCTAATATCTACAGTCGTAGAgttttaaggctcattgccgtaccatcttattattttttgatatcttattgatctattttgattgttaactgtttgtctttcagtggtgaatttgttgtggtgaacaag

upper sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA06G15350.1 (Glycine max), 5'ss of exon 13
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgccttct--ttctgtatcagctgtg-----atacttatgttgcctgctacag---------------------------
| || || || ||||| || ||||| || ||||| ||||||||||| |||||||||||||| || ||||| || || || |||  |||  | ||| |||||| ||| || |  | |  | |   ||||       ||||  ||   | || | |                             
TCGTGGCCCCTATGCCTACTGCATCTACTAGCCAGATTCTTGGAAATAACGAGTGTTTTGAACCATATACTTCAAACATATACAGTCGTAGAGTTTTAAGgtttgctttttcatcccattttttctgtcttggtgtactattgcctcatgatcctatcttactgggctactgtttgtttctag

upper sequence: EFJ20162 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 13
TTGTTGCTCCAATGCCGACGGCATCAACAAGCCAAATTCTTGGAAACAACGAGTGTTTTGAGCCTTATACATCCAATATTTACGCTCGACGCGTTCTAAGgtatgccttctttctgtatc--------------agctgtgatacttatgttgcctgctacag--------------------------
|||| || || ||||| || || ||||| ||||| |||||||||||||| ||||| |||||||| ||||| |||||||| |||  | |  | |||||||||| ||  ||  | |  || |              || | |  ||||| |||||||  |||                             
TTGTAGCACCTATGCCCACTGCTTCAACCAGCCAGATTCTTGGAAACAATGAGTGCTTTGAGCCCTATACTTCCAATATCTACAGTAGGAGAGTTCTAAGgtttgttttgctaccctaacctgttcattttctaagatttagtacttttgttgccatctaagtctcctctttccttgtttctttgtcag