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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCGGTGTGGGGATCTACGCCCTCGCCAACAGCTTGTACAATGTGGACGCCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgtaggcgagcttgccgcaagcatcgcattgctctctcttttatttcggggatcgccctttttgtagagttcgattgatcttttgccttccag

Basic information

species Selaginella moellendorffii
transcript EFJ20024
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ20024 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os03g62490.1 (Oryza sativa), 5'ss of exon 1
CGCCGGTGTGGGGATCTACGCCCTCGCCAACAGCTTGTACAATGTGGACGCCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgtaggc---------gagcttgccgcaagcatcgcattgctctctcttttatttcggggatcgccctttttgtagagttcgattgatcttttgccttccag----------------------------------
 | ||| |  |  |||||||||  |  ||||||| | ||||| || || |  || || ||||||||||||||||| |||||||  ||  ||||||||||||||  |          ||| | |        | |   ||   |  |  |   ||   |    ||  |   |||     |   ||| |   |||| ||  |                                   
GGGCGGCGCCGCCATCTACGCCGCCTTCAACAGCCTCTACAACGTCGAGGGAGGCCACCGCGCCATCGTCTTCAACCGCCTCGAGGGCATCAAGGACAAGgtaacccatcgatcgaagcctactagtgaacttgtgatgtgatgccgatgggtttcagagaagctatgcgtgtgcttgtgatttggtgggttgcgtttgaatgaattgttgtggttggttgtgtgctcggtgcag

upper sequence: EFJ20024 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: AC217358.3_FGT005 (Zea mays), 5'ss of exon 1
CGCCGGTGTGGGGATCTACGCCCTCGCCAACAGCTTGTACAATGTGGACGCCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgt-aggcgagcttg-ccgcaagcatcgcattgctctctcttttatttcgggga----tcgccctttttgtagagttcgattgatcttttgccttccag------------
|| ||| | |||| |||||||| ||  ||||||||| ||||| || || | ||| || ||||||||||||||||| |||||||  ||| ||||||||||||| |||| | || |  ||| | |      | ||   |   | | | |  | |     |||   ||||||    | | | ||     || || || |              
CGGCGGCGCGGGGCTCTACGCCGTCCTCAACAGCTTCTACAACGTCGAGGGCGGACACCGCGCCATCGTCTTCAACCGCCTCGAGGGGATCAAGGACAAGgtgaggccacctcggtcgcgaccgcgcagtggcggcccgatgtgtgtgagtgtggtttcgagttttttgactgggtgggttcccgattcgcatttcgttctctggcgcag

upper sequence: EFJ20024 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA12G01850.1 (Glycine max), 5'ss of exon 1
CGCCGGTGTGGGGATCTACGCCCTCGCCAACAGCTTGTACAATGTGGACGCCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgtaggcgagcttgccgcaagcatcgcattgct--ctctcttttatttcggggatcgccctttttgtagagt--tcgattgatcttttgccttccag-----
 |  ||  | |   | || |     || ||||||||||||||||| || |  || ||||| ||||| |||||||||||  | ||||| |||||||| |||||        |  ||   |   |   ||   |   |  |||| ||||         | ||||||| |   |  |   ||||  | | |   || |      
TGGTGGGCTTGTTGTTTATGGGGCTGCAAACAGCTTGTACAATGTTGAGGGAGGTCATCGAGCCATTGTCTTCAATCGTGTTGTCGGTGTCAAGGATAAGgttattccattgtccatgactgttaaatgaatgatttcctttaatttaacttgcaactctttttgcatcatctttagttgaagtct-gtactcaaatgaaa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169034220|gb|FE445060.1|FE445060
EST:     CCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAG                         GTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTG
genomic: CCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgtaggcgagc ... tgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTG
EST: gi|169107474|gb|FE504196.1|FE504196
EST:     CCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAG                         GTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTG
genomic: CCGGGCATCGCGCCATCGTCTTCAATCGCCTCGTCGGGGTCAAGGACAAGgtaggcgagc ... tgccttccagGTCTATCCCGAAGGAACGCATTTGATGGTGCCGTGGTTTGACAGGCCAGTG