Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtgatgtttctaagttgttcttcccaaggatttggagctcactctctcgcttggcttccag

Basic information

species Selaginella moellendorffii
transcript EFJ19598
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os10g28200.1 (Oryza sativa), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtag----cctgtgatgtttctaagttgttcttcccaaggatttggagctcactct---ctcgcttggcttccag--------------------------------
| ||||| ||||| |||||||| |||||||||||  | | ||||||||||||||||||||||||||||||||||||  | || |||||||| || |||||||      |      | ||| | |  | || || |       |   |||| |  ||   || | ||       |                                 
GTATGGGGTTCATTCAGTCCAACCACTCTGTGATCATGTACAACAACACCATGATCAGTTTCAACATGCTCGAGGCTGCACGTATCAATGGTGTGAAGAGgtccggctctctcttttttttttacatatttttactgttatatctcagcttagcctgagcttgttttatccatatcaattcatttgttacaactaatggtcctacag

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: LOC_Os11g37890.3 (Oryza sativa), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtga--tgtttctaagt-tgttcttcccaagg---atttggagctcactctctcgcttggcttccag--------------------------
| ||||||||||| || |||||||||||||| ||  | | |||||||||||||||||| || |||||||| |||||  |  |||| ||||| ||||| ||||| | | |||  || | ||   | |||   ||||| |    ||||    |  | |    |  | || | | |                           
GGATGGGATTCATTCAATCCAATCACTCTGTTATCATGTACAACAACACCATGATCAGCTTTAACATGCTTGAGGCCGCTAGGATTAATGGTGTCAAAAGgtaacttttgaactggtgctggctctgtaaatcccatgttttatttttcaccaattgatgctataggatgctaagatctgttaaggtatataaagcctat

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G124434_T01 (Zea mays), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgta-gcctgtga-tgt-ttctaagttgttcttcccaaggatttggagctcactctctcgcttggcttccag-----------------------------------------------------------------
| ||||| ||||||||||| ||||||||||||||  | | ||||||||||||||||||||| |||||||| |||||  | || |||||||| || ||||||||    |   | | | ||   | ||  | |||     |  | |    | |||  |    |   ||  | |                                                                 
GCATGGGGTTCATCCAGTCAAATCACTCTGTGATCATGTACAACAACACCATGATCAGTTTTAACATGCTGGAGGCTGCACGTATCAATGGTGTGAAGAGgtatatatacaaatatattgccacttcattttctttctggctggtgaataacttcccaagtaatctagctgatgctatttgactgaagttttcaaagaacctattcatgcataatagtatcattttggtctggcag

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GRMZM2G138907_T01 (Zea mays), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtgatgtttcta-agttgttcttc-ccaaggatttg-gagctcactctctcgcttggcttccag-----------------------------
| ||||| |||||||||||||| ||||| || ||  | | |||||||||||||||||| || |||||||| |||||  |  | || || || |||||||||||   |      |      || || ||||     |  ||  | |   | || ||   |      || ||                              
GGATGGGGTTCATCCAGTCCAACCACTCCGTCATCATGTACAACAACACCATGATCAGCTTTAACATGCTTGAGGCTGCTAGAATTAACGGCGTCAAGAGgtaatttccagcctcaaggtagctgctctttgtttatcatgcgtgcatttaccctggtgagctagtttcatatatattgcctccagtgctaaatctgttc

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA03G40720.1 (Glycine max), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtgatgtttctaagttgttcttcccaaggatttggagctcactctctcgcttggcttccag---------------------------------------
| ||||| |||||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || |||||||      |  ||     |  |   |  |        |||  |   ||   | | |  |   |  |                                         
GGATGGGTTTCATCCAGTCCAACCACTCGGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcatgatatagtctttatgtcgccgtcatagtgatccttgttttttggtttattttttttag

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA19G43400.1 (Glycine max), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgt----gatgtttctaagttgttct-tcccaaggatttggagctcactctctc-gcttggcttccag----------------------------------
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || |||||||      |     |      |  ||| || | || |    | ||| |    |   |||     | |||  ||                                   
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttaaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgtcatagtgatccttgttttttggtttattttttttaag

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA19G43410.1 (Glycine max), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtgatgtttctaagttgttcttcccaaggatttggagctcactctctcgcttggcttccag-----------------------------------------
| ||||| || ||||||||||| ||||| || ||| | | ||||||||||||||| || ||||||||| | |||||  || |||||||||| || |||||||      |  ||     |  |   |  |        |||  |   ||   | | |  |   |  |                                           
GGATGGGTTTTATCCAGTCCAACCACTCAGTCATTATGTACAACAACACCATGATTAGCTTCAACATGATTGAGGCTGCCAGGATCAATGGTGTTAAGAGgtcattcattttgaacaaacatgtgttattatgtcactttcaattgcataatatagtctttatgtcgctgacatagtgatccttgttttttggtttatttttttttaag

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv14s0030g02180.t01 (Vitis vinifera), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgtagcctgtgatgtttctaagttgttcttcccaaggatttggagctcactctctcgcttggcttccag-----------------------------------------------------------------------------------------------------------
||||||| |||||||||||||| || || || ||| | | ||| ||||| |||||||| ||||||||||| ||||| ||  |||||||||| || |||||||      || ||| |  || |||||||  ||  || ||||   || | |    |  |||   |  |                                                                                                            
GAATGGGGTTCATCCAGTCCAACCATTCAGTTATTATGTACAATAACACAATGATCAGCTTCAACATGCTTGAGGCTTCTAGGATCAATGGGGTTAAGAGgtt-----tgttgtcttcaatttgttctatcct-ggctttga--ctaagttctccatttgatatgaaaattggtttcatgtactcagcatttatctgtctaggagacgtaaatttactaatgaatttttctggtcctgagaattctctaatatctgattattccacattgtgcag

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv05s0020g04510.t01 (Vitis vinifera), 5'ss of exon 2
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgt----agcctgtgat---------gtttctaagtt-----gttcttcccaag--gatttggagctcactctctcgcttggcttccag-------------
| ||||| ||||| ||||||||||||||||| ||  | |  |||||||| ||||| || ||||||||||| ||||| ||  | |||||||| || |||||||      |||  |||          ||| ||  ||     |||||| |||||  ||||||    | | |||     |||    | |              
GTATGGGCTTCATTCAGTCCAATCACTCTGTTATCATGTATAACAACACAATGATTAGCTTCAACATGCTTGAGGCTTCAAGAATCAATGGGGTTAAGAGgtttgtctccttggattcactacttatttttagctttatcagttctttccaagttgatttgagaatta-tctactatttgaaaccaaagaatacttttttg

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S171_56V6.2 (Physcomitrella patens), 5'ss of exon 1
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCA--AGAGgtagcctgtgatgtttctaagttgttcttcccaagg-atttggagctcact-ctctcgctt-----ggcttccag-----------------------
| ||||| |||||||||||||||||| |||| ||| | | |||||| ||||||||||| ||||||||||| || || || || |||||||| |||   ||  | |  ||    | |  |       || | ||  ||  ||||  |||||  |  ||| ||||     ||  ||                          
GCATGGGCTTCATCCAGTCCAATCACGCTGTCATTATGTACAACAATACCATGATCAGCTTCAACATGCTTGAAGCCTCACGCATCAATGGTGTCTCTAGgtgcatgctcctctctgcccttccaattttaccttagccatttccagctctttattcttgctttcgaaggtctctgcttatgtgcaatctctgtttctct

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S237_14V6.1 (Physcomitrella patens), 5'ss of exon 1
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTCAAGAGgta---gcctgtgatgtttctaagttgttcttcccaag--gatttggagctcactctctcgcttggcttccag---------------------------
| ||||| ||||||||||| || ||| | || ||| | | ||||||||||||||||||||||||||||||||| ||  | || ||||| || || |   |||    ||    |  ||   |   |||   || |||    |||||  |  ||       |  || |     |                            
GTATGGGCTTCATCCAGTCTAACCACGCCGTCATTATGTACAACAACACCATGATCAGTTTCAACATGCTCGAAGCCGCTCGCATCAACGGTGTTACCCGgtgcgcgctctcgcagtgctttctttgccattaccagttcgattttcacttcgtctctgccattagtgggaattttgtttcttttattcctaattgcgtt

upper sequence: EFJ19598 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S98_250V6.1 (Physcomitrella patens), 5'ss of exon 1
GAATGGGATTCATCCAGTCCAATCACTCTGTGATTCTCTTCAACAACACCATGATCAGTTTCAACATGCTCGAGGCGTCCCGGATCAATGGAGTC----AAGAGgtagcctgtgatgtttctaagt-----tgttcttcccaaggatttggagctcactctctcgcttggcttccag-----------------------
| ||||| ||||| |||||||| ||| | |||||  | | |||||||||||||||||| || ||||||||||||||  | || |||||||| |||        || | ||  ||    ||||   |     | | | || |   | | |||| ||   | ||            ||                        
GCATGGGTTTCATTCAGTCCAACCACGCCGTGATCATGTACAACAACACCATGATCAGCTTTAACATGCTCGAGGCCGCGCGCATCAATGGCGTCTCTCGgttggcaacccttgccccttctttttgcctctctccctctcgcagctctggatcttcttttcgaaaaaaaaacacacagttaacaatgaatgtttctttg