1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGCGCTGAAGTGAGTCTAGATCTTCCAATCCTCGTCCCCAGGCATGGCGTCCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaattctaggaagaacagatggtctggaattgataggttttttttttctttctttctttctttctactccag
species | Selaginella moellendorffii |
transcript | EFJ18540 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169105292|gb|FE507629.1|FE507629
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169105684|gb|FE508450.1|FE508450
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169045117|gb|FE450948.1|FE450948
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169107453|gb|FE509141.1|FE509141
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169113212|gb|FE515186.1|FE515186
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169036888|gb|FE443848.1|FE443848
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169049667|gb|FE457759.1|FE457759
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169052782|gb|FE463565.1|FE463565
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169051998|gb|FE460337.1|FE460337
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAACEST: gi|169102153|gb|FE505779.1|FE505779
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
EST: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCG GATCCGGCTGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
genomic: CCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaatt ... tctactccagGATCCGGCCGTGCGTGCTCAAATGACTGGGAAGCCATCCTATCTCGGCAAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGCTGAAGTGAGTCTAGATCTTCCAATCCTCGTCCCCAGGCATGGCGTCCCGCTACGATTCGAATCCATTCGATGAGGAAGACGTCAATCCCTTCTCGgtgagaaattctaggaagaacagatggtctggaattgataggttttttttttctttctttctttctttctactccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA