1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTTTAGGCAATTCTCTTCTACAGAGGCGCTAGAGATTCTCGCCAGAGCCACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTGGCAGgtgattgatctttgaaaaattcgagtgcgagagatctgatcggccgattgatgcag
species | Selaginella moellendorffii |
transcript | EFJ18240 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTAGCAG TTCTTACGATTGCGCCGCTCGTCGTCAACGTAAATCCCAACGCTAACGTGAEST: gi|169059126|gb|FE468271.1|FE468271
genomic: ACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTGGCAGgtgattgatc ... attgatgcagTTCTTACGATTGCGCCGCTCGTCGTCAACGTAAATCCCAACGCTAACGTGA
EST: ACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTGGCAG TTCTTACGATTGCGCCGCTCGTCGTCAACGTAAATCCCAACGCTAACGTGAEST: gi|169074073|gb|FE481733.1|FE481733
genomic: ACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTGGCAGgtgattgatc ... attgatgcagTTCTTACGATTGCGCCGCTCGTCGTCAACGTAAATCCCAACGCTAACGTGA
EST: ACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTAGCAG TTCTTACGATTGCGCCGCTCGTCGTCAACGTAAATCCCAACGCTAACGTGA
genomic: ACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTGGCAGgtgattgatc ... attgatgcagTTCTTACGATTGCGCCGCTCGTCGTCAACGTAAATCCCAACGCTAACGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTTAGGCAATTCTCTTCTACAGAGGCGCTAGAGATTCTCGCCAGAGCCACGATTCATGGCGTCTTTAGCTGAGAGGATAGCTTCCGCGTGCCTGGCAGgtgattgatctttgaaaaattcgagtgcgagagatctgatcggccgattgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT