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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGAATGTCATGGACGAGACTTATATCATGGAGGATGTGAAGCATTCACTGTGCTTTTGCTCCAAGAATGTTCTTGGCGACCTCGACGTGGCAAGGTGgtgttctcgatttaaagcttttcgtcttgttttgacacagtggtggattcag

Basic information

species Selaginella moellendorffii
transcript EFJ15152
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ15152 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S62_87V6.1 (Physcomitrella patens), 5'ss of exon 2
---CCTGGAATGTCATGGACGAGACTTATATCATGGAGGATGTGAAGCATTCACTGTGCTTTTGCTCCAAGAATGTTCTTGGCGACCTCGACGTGGCAAGGTGgtg-ttctcgatttaaagcttttcgtcttgttttgacacagtggtggattcag---------------------------------------------------------------------------------------------------------------------------------
   | |||||||| ||||||||||| |||| ||||||||| |||||| |   |||||| |||  |||   | |  ||    | || ||| || | ||  |||||   ||||||  || |    ||| |     || |          |  ||||                                                                                                                                   
GGGCATGGAATGTAATGGACGAGACATATACCATGGAGGACGTGAAGGAAAAACTGTGTTTTGTCTCTTTGGACATTGAACGTGATCTCAACATTGCTCGgtggaacttctcgccttgatttgtttagctccattgttttcagtctttaaattccttctggaattttaattgctaagagatcatttgctcatgtggtatccattatgcatgttttggcgaggctttggtcatgattcattgttatcgatacaatagtagtggacaatgtcttcatcggtcttcag