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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCGCTGGGGTTTACAAGGGTGTTACTACCAGTCAGCTGGACGAATTGGCTGCCGAGACTGCGGCTTCCATGACTACAAGTCATCCTGACTATGCAATTgtaagctagaagcttgttctcgtttgttctgcaagcctttttctttgtcagtttacttatagttttcacag

Basic information

species Selaginella moellendorffii
transcript EFJ14283
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: Vv07s0031g01990.t01 (Vitis vinifera), 5'ss of exon 1
ATGCGCTGGGGTTTACAAGGGTGTTACTACCAGTCAGCTGGACGAATTGGCTGCCGAGACTGCGGCTTCCATGACTACAAGTCATCCTGACTATGCAATTgtaagctagaagcttgttctcgtttgttctgcaagcctttttctttgtcagtttacttatagttttcacag-----------------------------
 ||||||||||| |||||||| || |||||||| ||||| || |||||||| || || || || ||| | |||||| | | ||| || || |||||    ||  | |     | | || |   ||  | |     | ||||   ||       ||  |  | |  | |  |                             
GTGCGCTGGGGTCTACAAGGGCGTCACTACCAGCCAGCTTGATGAATTGGCCGCTGAAACCGCCGCTGCTATGACTGCCAATCACCCCGATTATGCCTCGgttggtttttctccttttatttctttctttttctccattttgtcttaaatacataggttaattgattatgggtggtcatttttgaaacttggttctgttt

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S195_46V6.1 (Physcomitrella patens), 5'ss of exon 1
ATGCGCTGGGGTTTACAAGGGTGTTACTACCAGTCAGCTGGACGAATTGGCTGCCGAGACTGCGGCTTCCATGACTACAAGTCATCCTGACTATGCAATTgtaagcta----------gaagcttgttctcgtt----tgttctgcaagcctttttctttgtcagtttacttatagttttcacag-------------------------------------------------------------
 |||   ||||| |||||||| || || || |||||||| || ||||||||||| |||||||| ||| |||||||  | |  ||||| ||||||||||| |||||||              |   ||| |  ||    |  | |    ||| |    | | ||| | |  ||  |  || | ||                                                              
GTGCATGGGGGTGTACAAGGGAGTGACCACGAGTCAGCTTGATGAATTGGCTGCGGAGACTGCTGCTGCCATGACCGCCAACCATCCAGACTATGCAATCgtaagctgctcccacggcatggaccgttgtaattccgatagtttcagggccgtccattatttcactgtgattccaagttccgcactggtttctgctgatttagcttcccttccggccaagccgaagtaacttcttccactgtgcag

upper sequence: EFJ14283 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S64_38V6.1 (Physcomitrella patens), 5'ss of exon 1
ATGCGCTGGGGTTTACAAGGGTGTTACTACCAGTCAGCTGGACGAATTGGCTGCCGAGACTGCGGCTTCCATGACTACAAGTCATCCTGACTATGCAATTgtaagct------------agaagcttgttctcgtttgttctgcaagcctttttctttgtcagtttacttatagttttcacag-------------------------------------------------------
 ||    || ||||||||||| || ||||| |||||||| || ||||| || || |||||||| ||  |||||||| | |  |||||||||||||| |||||||| |            |   ||| ||    || ||||      |   ||||  || |  ||  | ||||       |||                                                        
TTGTATGGGAGTTTACAAGGGGGTCACTACTAGTCAGCTTGATGAATTAGCCGCTGAGACTGCTGCGGCCATGACTGCGAACCATCCTGACTATGCCATTgtaagttcgtaacgtctggatgggctggtgtctgtctgttggctcggaaattttacttctttgtgcaattatgcccaatacaattcgcctcaagcctctttttggttgcttaacgaattccacgaattcttatggcag