Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCCTCTTTGTTGTGTGGAGAGGAAGAAGTGGCGGATTGAGGCGGCCATGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctcaatcatcgcggaattctctgttctagcgctagaatccacgagatttctcgccgtttgtcacatttgcattgatcgattggaaatatactggcgcag

Basic information

species Selaginella moellendorffii
transcript EFJ13677
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169054147|gb|FE463110.1|FE463110
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169105410|gb|FE507669.1|FE507669
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169019431|gb|FE427117.1|FE427117
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169061677|gb|FE469867.1|FE469867
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169099029|gb|FE501763.1|FE501763
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169083187|gb|FE493792.1|FE493792
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169049798|gb|FE458839.1|FE458839
EST:     GTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: GTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169033150|gb|FE441482.1|FE441482
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169036130|gb|FE445144.1|FE445144
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169069981|gb|FE476450.1|FE476450
EST:     GCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: GCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169036693|gb|FE444199.1|FE444199
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169030819|gb|FE440297.1|FE440297
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169106335|gb|FE506255.1|FE506255
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169110287|gb|FE510616.1|FE510616
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169019833|gb|FE426920.1|FE426920
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169052039|gb|FE460378.1|FE460378
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169068901|gb|FE477242.1|FE477242
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169111233|gb|FE510860.1|FE510860
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169066942|gb|FE474398.1|FE474398
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169037786|gb|FE442497.1|FE442497
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169071889|gb|FE477630.1|FE477630
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169114147|gb|FE516826.1|FE516826
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169042499|gb|FE450980.1|FE450980
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169044071|gb|FE451657.1|FE451657
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169079682|gb|FE486346.1|FE486346
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169077647|gb|FE484909.1|FE484909
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169071895|gb|FE477636.1|FE477636
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169061679|gb|FE469869.1|FE469869
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169058080|gb|FE463975.1|FE463975
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169031026|gb|FE440348.1|FE440348
EST:     CGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: CGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169108812|gb|FE513081.1|FE513081
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169105155|gb|FE504827.1|FE504827
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169115597|gb|FE517807.1|FE517807
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169064609|gb|FE471340.1|FE471340
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169061368|gb|FE470936.1|FE470936
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169022182|gb|FE430985.1|FE430985
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169071780|gb|FE477157.1|FE477157
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169072313|gb|FE479406.1|FE479406
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169067263|gb|FE473874.1|FE473874
EST:     CCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: CCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169068350|gb|FE480721.1|FE480721
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169102749|gb|FE508611.1|FE508611
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169103008|gb|FE504736.1|FE504736
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169033912|gb|FE441944.1|FE441944
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169056259|gb|FE464394.1|FE464394
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169068401|gb|FE478991.1|FE478991
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169097531|gb|FE497973.1|FE497973
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169083655|gb|FE495895.1|FE495895
EST:     GGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: GGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169024910|gb|FE435537.1|FE435537
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169059314|gb|FE467482.1|FE467482
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
EST: gi|169099413|gb|FE501003.1|FE501003
EST:     TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCT                         AGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA
genomic: TGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 35 (downstream exon)
Score: 127

GGCCTCTTTGTTGTGTGGAGAGGAAGAAGTGGCGGATTGAGGCGGCCATGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctca ... actggcgcagAGCAAGGGCTTCTCGGATTTCTCCGGCCTCAAGAGCAAGAACGCCGTCACATTCGGGAGAGGCGCCGAGGATTTGGCGTCCAGAGTTGCCGCCCAGACTT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGCCTCTTTGTTGTGTGGAGAGGAAGAAGTGGCGGATTGAGGCGGCCATGGCGGCAGCGTCCATCACGCCGGCGTGTGTCCGATGCAATGCCGCTGCTgtaagtctcaatcatcgcggaattctctgttctagcgctagaatccacgagatttctcgccgtttgtcacatttgcattgatcgattggaaatatactggcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT