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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCTGCCTCTTCCTGTTGCTGAGCAGTTACACCAAATGGTTTTTGGGCCTCAGGTCACCAGGGAAGTCCTTGCGCAGTGGTGCAACCAAGGATTCAGgtaaccacctttcttctctccgcgctcccttcaccttcttctcgttttgctcaaaaaaaaaaaaaaaaaag

Basic information

species Selaginella moellendorffii
transcript EFJ11004
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169095730|gb|FE499695.1|FE499695
EST:     CCTCAGGTCACCAGGGAAGTCCTTGCGCAGTGGTGCAACCAAGGATTCAG                         GTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG
genomic: CCTCAGGTCACCAGGGAAGTCCTTGCGCAGTGGTGCAACCAAGGATTCAGgtaaccacct ... aaaaaaaaagGTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG
EST: gi|169095343|gb|FE499412.1|FE499412
EST:     CCTCAGGTCACCAGGGAAGTCCTTGCGCAGTGGTGCAACCAAGGATTCAG                         GTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG
genomic: CCTCAGGTCACCAGGGAAGTCCTTGCGCAGTGGTGCAACCAAGGATTCAGgtaaccacct ... aaaaaaaaagGTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG
EST: gi|169096367|gb|FE498122.1|FE498122
EST:     CCTCAGGTCACCAGGGAAGTCCTTGCGCAGTGGTACAACCAAGGATTCAG                         GTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG
genomic: CCTCAGGTCACCAGGGAAGTCCTTGCGCAGTGGTGCAACCAAGGATTCAGgtaaccacct ... aaaaaaaaagGTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG
EST: gi|169086797|gb|FE494122.1|FE494122
EST:     GCAACCAAGGATTCAG                         GTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG
genomic: GCAACCAAGGATTCAGgtaaccacct ... aaaaaaaaagGTTTAGCTCCGACCTGGAGACATCACTGGGACTCGTACAGCATGAGGGTGG