1 5' 3' | 2 5' 3' | 3 5' 3' |
CAACCAGGCATCCCGCTACGTGAAGCTGGTCAAGGAGCAGGATGGACCCATGGAAGAGATCCTCGAGGGCGAGCTCAATCAGCCGGTTGTTGTCCCGCAGgtgaattgcagctccagatctgcttgtctttccacagatctcaagtggttgttcgatttccttccag
species | Selaginella moellendorffii |
transcript | EFJ09771 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGAGATCCTCGAGGGCGAGCTCAATCAGCCGGTTGTTGTCCCGCAG CTGCTCGTTCACCGTTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTACEST: gi|169048617|gb|FE455799.1|FE455799
genomic: TGGAAGAGATCCTCGAGGGCGAGCTCAATCAGCCGGTTGTTGTCCCGCAGgtgaattgca ... ttccttccagCTGCTCGTTCACCGTTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTAC
EST: AGGGCGAGCTCAATCAGCCGGTTGTTGTCCCGCAG CTGCTCGTTCACCGTTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTAC
genomic: AGGGCGAGCTCAATCAGCCGGTTGTTGTCCCGCAGgtgaattgca ... ttccttccagCTGCTCGTTCACCGTTGCCGCGAATGCGGCCAACCGCTACCCGAGAGCTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACCAGGCATCCCGCTACGTGAAGCTGGTCAAGGAGCAGGATGGACCCATGGAAGAGATCCTCGAGGGCGAGCTCAATCAGCCGGTTGTTGTCCCGCAGgtgaattgcagctccagatctgcttgtctttccacagatctcaagtggttgttcgatttccttccag
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA