1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGATGGGATTCATACAATCGAATCACTCGGTGATTCTTTTCAACAACACCATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaaatctttttttttccttggtattttgacttttccttctcccag
species | Selaginella moellendorffii |
transcript | EFJ09286 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169078884|gb|FE489656.1|FE489656
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGGAGTCAAAAG -GTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAAC-TGAEST: gi|169046275|gb|FE456408.1|FE456408
genomic: ATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTG-
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|70670419|gb|DN838996.1|DN838996
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169047515|gb|FE455710.1|FE455710
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAGTGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169081289|gb|FE489279.1|FE489279
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169102737|gb|FE508092.1|FE508092
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169066577|gb|FE474137.1|FE474137
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169115073|gb|FE516646.1|FE516646
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG ATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169113665|gb|FE515291.1|FE515291
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG GTTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169074849|gb|FE482743.1|FE482743
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG GTTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169078885|gb|FE489657.1|FE489657
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG GTTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGAEST: gi|169099895|gb|FE503383.1|FE503383
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
EST: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAG GTTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
genomic: ATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaa ... cttctcccagATTTTTCTATGCATCCAGCGCATGCATTTACCCAGAATTCAAGCAACTTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGGATTCATACAATCGAATCACTCGGTGATTCTTTTCAACAACACCATGATCAGTTTCAACATGCTGGAAGCAGCTCGGATCAATGGAGTCAAAAGgtttgggaaaatctttttttttccttggtattttgacttttccttctcccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC